Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0880.Seq
(419 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q96CW1 Cluster: AP-2 complex subunit mu-1; n=94; Fungi/... 111 4e-24
UniRef50_UPI0000D67F79 Cluster: PREDICTED: similar to Chain M, A... 107 1e-22
UniRef50_P35603 Cluster: AP-2 complex subunit mu; n=23; Eukaryot... 107 1e-22
UniRef50_Q3E8F7 Cluster: Uncharacterized protein At5g46630.2; n=... 51 8e-06
UniRef50_Q5A2L1 Cluster: Potential clathrin-associated protein A... 50 1e-05
UniRef50_Q00U04 Cluster: Clathrin adaptor complexes medium subun... 49 4e-05
UniRef50_A3LVW0 Cluster: Predicted protein; n=2; Pichia|Rep: Pre... 49 4e-05
UniRef50_Q6CUL9 Cluster: Similar to sp|Q99186 Saccharomyces cere... 48 6e-05
UniRef50_Q22V00 Cluster: Adaptor complexes medium subunit family... 48 8e-05
UniRef50_Q99186 Cluster: AP-2 complex subunit mu; n=2; Saccharom... 44 0.001
UniRef50_A7QVV2 Cluster: Chromosome undetermined scaffold_193, w... 44 0.002
UniRef50_Q09718 Cluster: AP-2 complex subunit mu; n=1; Schizosac... 43 0.002
UniRef50_Q9BXS5 Cluster: AP-1 complex subunit mu-1; n=137; Eukar... 39 0.047
UniRef50_Q6CC50 Cluster: Yarrowia lipolytica chromosome C of str... 38 0.063
UniRef50_Q1EQ16 Cluster: Mu 2 subunit isoform 2; n=1; Entamoeba ... 37 0.19
UniRef50_Q4DZV1 Cluster: Clathrin coat assembly protein, putativ... 36 0.25
UniRef50_A2DPT4 Cluster: Adaptor complexes medium subunit family... 36 0.25
UniRef50_Q7RKU6 Cluster: Clathrin coat assembly protein ap54; n=... 36 0.44
UniRef50_Q4N7V8 Cluster: Clathrin medium chain, putative; n=6; A... 36 0.44
UniRef50_Q22B93 Cluster: Adaptor complexes medium subunit family... 35 0.58
UniRef50_Q1EAF0 Cluster: Putative uncharacterized protein; n=1; ... 35 0.58
UniRef50_Q00776 Cluster: AP-1 complex subunit mu-1 (Mu(1)-adapti... 35 0.77
UniRef50_UPI000051A242 Cluster: PREDICTED: similar to CG16708-PA... 33 2.4
UniRef50_Q759G1 Cluster: ADR315Wp; n=1; Eremothecium gossypii|Re... 33 2.4
UniRef50_Q583J1 Cluster: Mu-adaptin 3, putative; n=3; Trypanosom... 32 4.1
UniRef50_A5E396 Cluster: AP-1 complex subunit mu-1; n=6; Sacchar... 32 4.1
UniRef50_Q6ZS30 Cluster: Neurobeachin-like 1; n=24; Euteleostomi... 32 4.1
UniRef50_Q9VG17 Cluster: Probable cytochrome P450 304a1; n=1; Dr... 32 4.1
UniRef50_Q3VSN4 Cluster: Similar to Conjugal transfer/entry excl... 31 7.2
UniRef50_Q7RAH7 Cluster: Clathrin coat assembly protein ap50; n=... 31 7.2
UniRef50_Q9AV01 Cluster: Putative uncharacterized protein OSJNBa... 31 9.5
UniRef50_Q337K5 Cluster: Expressed protein; n=3; Magnoliophyta|R... 31 9.5
UniRef50_Q8IPP3 Cluster: CG31537-PA; n=2; Drosophila melanogaste... 31 9.5
UniRef50_Q2GZI9 Cluster: Putative uncharacterized protein; n=1; ... 31 9.5
>UniRef50_Q96CW1 Cluster: AP-2 complex subunit mu-1; n=94;
Fungi/Metazoa group|Rep: AP-2 complex subunit mu-1 -
Homo sapiens (Human)
Length = 435
Score = 111 bits (268), Expect = 4e-24
Identities = 52/53 (98%), Positives = 53/53 (100%)
Frame = +3
Query: 96 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART 254
MIGGLF+YNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART 53
Score = 51.2 bits (117), Expect = 8e-06
Identities = 24/37 (64%), Positives = 26/37 (70%)
Frame = +1
Query: 301 KAKCERGMVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
K MVFE L K+ DVM +YFGKISEENI NNFV
Sbjct: 70 KQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFV 106
Score = 48.8 bits (111), Expect = 4e-05
Identities = 20/23 (86%), Positives = 23/23 (100%)
Frame = +2
Query: 254 TFFHIKRANIWLAAVTKQNVNAA 322
+FFH+KR+NIWLAAVTKQNVNAA
Sbjct: 54 SFFHVKRSNIWLAAVTKQNVNAA 76
>UniRef50_UPI0000D67F79 Cluster: PREDICTED: similar to Chain M, Ap2
Clathrin Adaptor Core; n=2; Eutheria|Rep: PREDICTED:
similar to Chain M, Ap2 Clathrin Adaptor Core - Mus
musculus
Length = 230
Score = 107 bits (256), Expect = 1e-22
Identities = 50/53 (94%), Positives = 51/53 (96%)
Frame = +3
Query: 96 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART 254
MIGGLF+YNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ RSPVTNIA T
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQARSPVTNIACT 53
Score = 48.4 bits (110), Expect = 6e-05
Identities = 22/37 (59%), Positives = 25/37 (67%)
Frame = +1
Query: 301 KAKCERGMVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
K MV E L K+ D+M +YFGKISEENI NNFV
Sbjct: 70 KQNVNAAMVIEFLYKMCDIMAAYFGKISEENIKNNFV 106
Score = 44.4 bits (100), Expect = 0.001
Identities = 20/26 (76%), Positives = 24/26 (92%)
Frame = +2
Query: 245 CTHTFFHIKRANIWLAAVTKQNVNAA 322
CT +FF++K +NIWLAAVTKQNVNAA
Sbjct: 52 CT-SFFYVKWSNIWLAAVTKQNVNAA 76
>UniRef50_P35603 Cluster: AP-2 complex subunit mu; n=23;
Eukaryota|Rep: AP-2 complex subunit mu - Caenorhabditis
elegans
Length = 441
Score = 107 bits (256), Expect = 1e-22
Identities = 49/53 (92%), Positives = 52/53 (98%)
Frame = +3
Query: 96 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART 254
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNVIHARQQVRSPVTN+ART
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQVRSPVTNMART 53
Score = 45.6 bits (103), Expect = 4e-04
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +1
Query: 322 MVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
MVFE L + D M SYFGK++EEN+ NNFV
Sbjct: 77 MVFEFLKRFADTMQSYFGKLNEENVKNNFV 106
Score = 44.4 bits (100), Expect = 0.001
Identities = 16/23 (69%), Positives = 21/23 (91%)
Frame = +2
Query: 254 TFFHIKRANIWLAAVTKQNVNAA 322
+FFH+KR N+W+ AVT+QNVNAA
Sbjct: 54 SFFHVKRGNVWICAVTRQNVNAA 76
>UniRef50_Q3E8F7 Cluster: Uncharacterized protein At5g46630.2; n=17;
Viridiplantae|Rep: Uncharacterized protein At5g46630.2 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 441
Score = 51.2 bits (117), Expect = 8e-06
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = +3
Query: 90 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNI 245
P ++ N +G+VLI+R YRDD+G N VDAFR +++ ++ PV I
Sbjct: 2 PVAASAIYFLNLRGDVLINRTYRDDVGGNMVDAFRTHIMQTKELGNCPVRQI 53
>UniRef50_Q5A2L1 Cluster: Potential clathrin-associated protein AP-2
complex component; n=3; Saccharomycetales|Rep: Potential
clathrin-associated protein AP-2 complex component -
Candida albicans (Yeast)
Length = 470
Score = 50.4 bits (115), Expect = 1e-05
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 5/58 (8%)
Frame = +3
Query: 96 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVI-----HARQQVRSPVTNIART 254
MI +F+Y+ KG++LIS++Y+D I RN D FR+ VI + ++ RSPV + T
Sbjct: 1 MITAIFIYDSKGDILISKLYKDGIKRNISDVFRIQVISQTSTNRAKEYRSPVLTLGST 58
>UniRef50_Q00U04 Cluster: Clathrin adaptor complexes medium subunit
family protein; n=2; Ostreococcus|Rep: Clathrin adaptor
complexes medium subunit family protein - Ostreococcus
tauri
Length = 496
Score = 48.8 bits (111), Expect = 4e-05
Identities = 22/51 (43%), Positives = 32/51 (62%)
Frame = +3
Query: 99 IGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIAR 251
+ G+FV N +G+VLI+R YRD+I R +DAFR ++ R +S AR
Sbjct: 5 VSGVFVVNLRGDVLITRAYRDEIDRTVLDAFRTQILLDRHDGKSVHARAAR 55
>UniRef50_A3LVW0 Cluster: Predicted protein; n=2; Pichia|Rep:
Predicted protein - Pichia stipitis (Yeast)
Length = 465
Score = 48.8 bits (111), Expect = 4e-05
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 8/61 (13%)
Frame = +3
Query: 96 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVI--------HARQQVRSPVTNIAR 251
MI LF+Y+ KG+VL+S++Y+D I RN D FR+ +I + + VRSPV +
Sbjct: 1 MITALFIYDSKGDVLMSKLYKDGIKRNISDVFRIQIISTTNKGASSSSRDVRSPVLTLGS 60
Query: 252 T 254
T
Sbjct: 61 T 61
>UniRef50_Q6CUL9 Cluster: Similar to sp|Q99186 Saccharomyces
cerevisiae YOL062c APM4 AP-2 complex subunit; n=3;
Saccharomycetales|Rep: Similar to sp|Q99186
Saccharomyces cerevisiae YOL062c APM4 AP-2 complex
subunit - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 475
Score = 48.4 bits (110), Expect = 6e-05
Identities = 21/53 (39%), Positives = 34/53 (64%)
Frame = +3
Query: 96 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART 254
M+ +F+YN KG++LIS++ +D + R+ D FR VI+ VRSP+ + T
Sbjct: 1 MLSAIFIYNAKGDLLISKLIKDHVKRSLADVFRTQVIN-DPHVRSPILTLGST 52
>UniRef50_Q22V00 Cluster: Adaptor complexes medium subunit family
protein; n=5; Oligohymenophorea|Rep: Adaptor complexes
medium subunit family protein - Tetrahymena thermophila
SB210
Length = 433
Score = 48.0 bits (109), Expect = 8e-05
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = +3
Query: 96 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART 254
MI + N KGE+LI R+Y+DDI R F NV+ ++ SP+ NI T
Sbjct: 1 MISSIVFINSKGEILIYRIYKDDISRAETMQFCTNVVARKESKESPIVNIDGT 53
>UniRef50_Q99186 Cluster: AP-2 complex subunit mu; n=2;
Saccharomyces cerevisiae|Rep: AP-2 complex subunit mu -
Saccharomyces cerevisiae (Baker's yeast)
Length = 491
Score = 44.4 bits (100), Expect = 0.001
Identities = 20/53 (37%), Positives = 35/53 (66%)
Frame = +3
Query: 96 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART 254
MI G+ VY+ +GE+++++ +++ + R+ D FRV VI+ VRSPV + T
Sbjct: 1 MISGVLVYSSRGELVLNKFFKNSLKRSISDIFRVQVIN-NLDVRSPVLTLGST 52
>UniRef50_A7QVV2 Cluster: Chromosome undetermined scaffold_193,
whole genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome undetermined scaffold_193, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 149
Score = 43.6 bits (98), Expect = 0.002
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +3
Query: 126 KGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNI 245
+G+V I+R+YRDD+G N DAFR+++ ++ PV I
Sbjct: 28 RGDVFINRLYRDDVGGNMADAFRMHITQTKELSTCPVQQI 67
>UniRef50_Q09718 Cluster: AP-2 complex subunit mu; n=1;
Schizosaccharomyces pombe|Rep: AP-2 complex subunit mu -
Schizosaccharomyces pombe (Fission yeast)
Length = 446
Score = 43.2 bits (97), Expect = 0.002
Identities = 18/50 (36%), Positives = 31/50 (62%)
Frame = +3
Query: 96 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNI 245
MI GLF++N KG+ LI + +R D+ ++ + FRV ++ R P+ +I
Sbjct: 1 MISGLFIFNLKGDTLICKTFRHDLKKSVTEIFRVAIL-TNTDYRHPIVSI 49
>UniRef50_Q9BXS5 Cluster: AP-1 complex subunit mu-1; n=137;
Eukaryota|Rep: AP-1 complex subunit mu-1 - Homo sapiens
(Human)
Length = 423
Score = 38.7 bits (86), Expect = 0.047
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +1
Query: 280 YLAGSSHKAKCERGMVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
YL +S K C +VF L K++ V YF ++ EE+I +NFV
Sbjct: 66 YLVATSKKNACV-SLVFSFLYKVVQVFSEYFKELEEESIRDNFV 108
>UniRef50_Q6CC50 Cluster: Yarrowia lipolytica chromosome C of strain
CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
lipolytica|Rep: Yarrowia lipolytica chromosome C of
strain CLIB122 of Yarrowia lipolytica - Yarrowia
lipolytica (Candida lipolytica)
Length = 419
Score = 38.3 bits (85), Expect = 0.063
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = +1
Query: 298 HKAKCERGMVFEXLLKIIDVMXSYFGKISEENIMNNF 408
+++ + GMVFE L KI+ + SYFG +E+++ NF
Sbjct: 27 NRSNVDAGMVFEFLYKIVALGKSYFGSFNEQSVKENF 63
>UniRef50_Q1EQ16 Cluster: Mu 2 subunit isoform 2; n=1; Entamoeba
histolytica|Rep: Mu 2 subunit isoform 2 - Entamoeba
histolytica
Length = 407
Score = 36.7 bits (81), Expect = 0.19
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +3
Query: 120 NHKGEVLISRVYRDDIGRNAVDAFRVNVI 206
N KG++LISR+YRDD+ + AFR V+
Sbjct: 2 NAKGDLLISRIYRDDVMKGVASAFRSYVL 30
>UniRef50_Q4DZV1 Cluster: Clathrin coat assembly protein, putative;
n=2; Trypanosoma cruzi|Rep: Clathrin coat assembly
protein, putative - Trypanosoma cruzi
Length = 416
Score = 36.3 bits (80), Expect = 0.25
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +3
Query: 96 MIGGLFVYNHKGEVLISRVYRDDIG-RNAVDAFRVNVIHARQQVRSPV 236
MIG L N +G+V +SR +RD R ++FR +I + RSP+
Sbjct: 1 MIGVLMFLNSRGDVALSRTFRDGFSVRGLAESFRNRLISTSEVERSPI 48
>UniRef50_A2DPT4 Cluster: Adaptor complexes medium subunit family
protein; n=1; Trichomonas vaginalis G3|Rep: Adaptor
complexes medium subunit family protein - Trichomonas
vaginalis G3
Length = 428
Score = 36.3 bits (80), Expect = 0.25
Identities = 17/53 (32%), Positives = 32/53 (60%)
Frame = +3
Query: 96 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART 254
MI + + + GE+++ + YR D ++A D +R++VI A ++ SP+ I T
Sbjct: 1 MISAIALIDSTGELIVLKTYRKDFNQSAFDNYRLSVI-APNEITSPIVLIDGT 52
>UniRef50_Q7RKU6 Cluster: Clathrin coat assembly protein ap54; n=8;
Eukaryota|Rep: Clathrin coat assembly protein ap54 -
Plasmodium yoelii yoelii
Length = 459
Score = 35.5 bits (78), Expect = 0.44
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 99 IGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNI 245
I +F+ + KG+V+ISR YR +I N ++ F VI + P+ ++
Sbjct: 4 ISAIFIIDLKGKVIISRNYRGEINANLLEVFYNCVIDQEDNLIKPIFHV 52
>UniRef50_Q4N7V8 Cluster: Clathrin medium chain, putative; n=6;
Alveolata|Rep: Clathrin medium chain, putative -
Theileria parva
Length = 452
Score = 35.5 bits (78), Expect = 0.44
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +3
Query: 99 IGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPV 236
I G+++ + KG ++I R Y+ D+ N DAF NVI PV
Sbjct: 22 ISGIYILDLKGRLIICRNYKADLLTNVCDAFYENVILQDSSTLKPV 67
>UniRef50_Q22B93 Cluster: Adaptor complexes medium subunit family
protein; n=3; Tetrahymena thermophila|Rep: Adaptor
complexes medium subunit family protein - Tetrahymena
thermophila SB210
Length = 444
Score = 35.1 bits (77), Expect = 0.58
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +1
Query: 256 FLPYQACKYLAGSSHKAKCERGMVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
+L + +LA S C MVF L ++I V+ YF ++ EE++ +NFV
Sbjct: 65 YLHHNNLIFLAISRKNTNCM--MVFSFLYQLIQVLVDYFKELEEESVRDNFV 114
Score = 34.3 bits (75), Expect = 1.0
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 93 TMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVI 206
T I +++ +HKG VLI+R Y+ D+ N D F ++
Sbjct: 7 TGISAIYILDHKGRVLITRCYKGDLPINIHDIFNKKLL 44
>UniRef50_Q1EAF0 Cluster: Putative uncharacterized protein; n=1;
Coccidioides immitis|Rep: Putative uncharacterized
protein - Coccidioides immitis
Length = 766
Score = 35.1 bits (77), Expect = 0.58
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +3
Query: 207 HARQQVRSPV-TNIARTLSSISSVQIFGWQQSQSKM*TRH 323
H + +SP+ ++ TL+ +S+++ FGWQQS + RH
Sbjct: 378 HMDLEAKSPIYSHFLETLNGLSTIRAFGWQQSSKNINIRH 417
>UniRef50_Q00776 Cluster: AP-1 complex subunit mu-1 (Mu(1)-adaptin);
n=5; Saccharomycetales|Rep: AP-1 complex subunit mu-1
(Mu(1)-adaptin) - Saccharomyces cerevisiae (Baker's
yeast)
Length = 475
Score = 34.7 bits (76), Expect = 0.77
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +3
Query: 96 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ 221
M ++ +H G+ L+SR YRDDI +A+D F + + +Q
Sbjct: 1 MASAVYFCDHNGKPLLSRRYRDDIPLSAIDKFPILLSDLEEQ 42
>UniRef50_UPI000051A242 Cluster: PREDICTED: similar to CG16708-PA,
isoform A; n=1; Apis mellifera|Rep: PREDICTED: similar
to CG16708-PA, isoform A - Apis mellifera
Length = 431
Score = 33.1 bits (72), Expect = 2.4
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 182 GRIQSECDPCSPAGAITCYQHCTHTFFHIKRAN 280
G IQ DPC PA + C ++CT H+ +N
Sbjct: 246 GEIQLLSDPCHPATSTRCTKNCTRCLQHMHNSN 278
>UniRef50_Q759G1 Cluster: ADR315Wp; n=1; Eremothecium gossypii|Rep:
ADR315Wp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 492
Score = 33.1 bits (72), Expect = 2.4
Identities = 15/53 (28%), Positives = 30/53 (56%)
Frame = +3
Query: 96 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART 254
MI FV+ +G +++S++ + + + FR+ VI+ ++RSPV + T
Sbjct: 1 MIDAFFVFAPRGSLIVSKLISGEAKESLSEVFRLQVING-LEIRSPVLTLGST 52
>UniRef50_Q583J1 Cluster: Mu-adaptin 3, putative; n=3;
Trypanosoma|Rep: Mu-adaptin 3, putative - Trypanosoma
brucei
Length = 426
Score = 32.3 bits (70), Expect = 4.1
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +3
Query: 96 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAF 191
MI GLF N GEV+I + +R+ + R++++ F
Sbjct: 1 MITGLFFLNKHGEVIIEKEFREKVPRSSLEDF 32
>UniRef50_A5E396 Cluster: AP-1 complex subunit mu-1; n=6;
Saccharomycetales|Rep: AP-1 complex subunit mu-1 -
Lodderomyces elongisporus (Yeast) (Saccharomyces
elongisporus)
Length = 445
Score = 32.3 bits (70), Expect = 4.1
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = +1
Query: 337 LLKIIDVMXSYFGKISEENIMNNFV 411
L K+IDVM YF + EE+I +NFV
Sbjct: 86 LSKMIDVMTQYFKSLEEESIRDNFV 110
>UniRef50_Q6ZS30 Cluster: Neurobeachin-like 1; n=24;
Euteleostomi|Rep: Neurobeachin-like 1 - Homo sapiens
(Human)
Length = 1314
Score = 32.3 bits (70), Expect = 4.1
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = +1
Query: 220 RCDHLLPTLHAHFLPYQACKYLAGSSHKAKCERGMVFEXLLK 345
RC+ L L H L Y CK L S ERG VF L K
Sbjct: 145 RCEEELLQLLTHILNYVMCKGLEKSDDDTWIERGQVFSALSK 186
>UniRef50_Q9VG17 Cluster: Probable cytochrome P450 304a1; n=1;
Drosophila melanogaster|Rep: Probable cytochrome P450
304a1 - Drosophila melanogaster (Fruit fly)
Length = 510
Score = 32.3 bits (70), Expect = 4.1
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +3
Query: 111 FVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTN 242
F Y HK + +SR Y+ DI V F V V+H+ VR + N
Sbjct: 50 FKYLHKAALTLSRWYKSDIIGLHVGPFPVAVVHSADGVREILNN 93
>UniRef50_Q3VSN4 Cluster: Similar to Conjugal transfer/entry
exclusion protein precursor; n=1; Prosthecochloris
aestuarii DSM 271|Rep: Similar to Conjugal
transfer/entry exclusion protein precursor -
Prosthecochloris aestuarii DSM 271
Length = 245
Score = 31.5 bits (68), Expect = 7.2
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +3
Query: 162 DIGRNAVDAFRV--NVIHARQQVRSPVTNIARTLSSISSVQIFGWQQSQSKM*TRHG 326
++ RN V + ++ +V+H Q+++ + TL S+ S+ WQQ QS + + G
Sbjct: 30 NLSRNTVTSVQMVQDVLHQVTQIQNQIRQYEATLQSLQSLDASTWQQVQSLLRAQTG 86
>UniRef50_Q7RAH7 Cluster: Clathrin coat assembly protein ap50; n=5;
Plasmodium (Vinckeia)|Rep: Clathrin coat assembly
protein ap50 - Plasmodium yoelii yoelii
Length = 601
Score = 31.5 bits (68), Expect = 7.2
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +3
Query: 96 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNI 245
MI GL+++ G++LI R YR I N + + I ++ P+ I
Sbjct: 1 MIEGLYIFFANGQLLIQRNYRSMINNNDLKLYVSKYIKTKRFYEHPIVEI 50
>UniRef50_Q9AV01 Cluster: Putative uncharacterized protein
OSJNBa0026O12.10; n=3; Oryza sativa|Rep: Putative
uncharacterized protein OSJNBa0026O12.10 - Oryza sativa
subsp. japonica (Rice)
Length = 1066
Score = 31.1 bits (67), Expect = 9.5
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +1
Query: 208 MLASRCDHLLPTLHAHFLPYQACKYLAGSSHKAKCERGMVFEXLLKIIDVMXSYFGKISE 387
M + + ++ +LH+ +PYQAC+++ +SH F+ I D +G +S+
Sbjct: 32 MSPADAEKVISSLHSSPMPYQACRFILETSHMPNAR----FQAAGAIGDAAIREWGILSD 87
Query: 388 EN 393
+N
Sbjct: 88 DN 89
>UniRef50_Q337K5 Cluster: Expressed protein; n=3; Magnoliophyta|Rep:
Expressed protein - Oryza sativa subsp. japonica (Rice)
Length = 1166
Score = 31.1 bits (67), Expect = 9.5
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +1
Query: 208 MLASRCDHLLPTLHAHFLPYQACKYLAGSSHKAKCERGMVFEXLLKIIDVMXSYFGKISE 387
M + + ++ +LH+ +PYQAC+++ +SH F+ I D +G +S+
Sbjct: 32 MSPADAEKVISSLHSSPMPYQACRFILETSHMPNAR----FQAAGAIGDAAIREWGILSD 87
Query: 388 EN 393
+N
Sbjct: 88 DN 89
>UniRef50_Q8IPP3 Cluster: CG31537-PA; n=2; Drosophila
melanogaster|Rep: CG31537-PA - Drosophila melanogaster
(Fruit fly)
Length = 654
Score = 31.1 bits (67), Expect = 9.5
Identities = 26/99 (26%), Positives = 45/99 (45%)
Frame = -2
Query: 415 IRQSYS*CSLQKSCQNTXASHQ*SSTXTQIPCRVHILLCDCCQPNICTLDMEESVRAMLV 236
+RQ++S C Q NT SH+ S T P V I + P++C ++ + +
Sbjct: 258 LRQNHSPCQRQL---NTQRSHKRSGVGTAAPI-VSIQV-----PSVCEIESSSTRSPTVN 308
Query: 235 TGDRTCWRAWITFTLNASTALRPISSR*TLEINTSPLWL 119
T +R C ST ++ S R + ++N +P +L
Sbjct: 309 TSNRYCASTTFQTKTIPSTTMKANSRRASSQVNLNPRFL 347
>UniRef50_Q2GZI9 Cluster: Putative uncharacterized protein; n=1;
Chaetomium globosum|Rep: Putative uncharacterized
protein - Chaetomium globosum (Soil fungus)
Length = 1098
Score = 31.1 bits (67), Expect = 9.5
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = -3
Query: 414 SDKVIHNVLFRNLAKIRXHHIND-LQQXLKYHAAFTFCFVTAASQIFARLIWKKVC 250
++++ NV+F +A I + + L L H F V+ F L+WK++C
Sbjct: 764 TERLFKNVIFERIASITTEAVAERLVDCLIRHHGFPRAIVSDRGPQFVSLMWKRIC 819
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 403,435,954
Number of Sequences: 1657284
Number of extensions: 7613237
Number of successful extensions: 17551
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 17090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17549
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 19389441554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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