BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0880.Seq (419 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 43 2e-05 SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 34 0.008 SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces... 27 1.6 SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 27 1.6 SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 2.1 SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 26 2.7 SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 25 3.6 SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 24 8.4 SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 24 8.4 SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 24 8.4 >SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosaccharomyces pombe|chr 1|||Manual Length = 446 Score = 43.2 bits (97), Expect = 2e-05 Identities = 18/50 (36%), Positives = 31/50 (62%) Frame = +3 Query: 96 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNI 245 MI GLF++N KG+ LI + +R D+ ++ + FRV ++ R P+ +I Sbjct: 1 MISGLFIFNLKGDTLICKTFRHDLKKSVTEIFRVAIL-TNTDYRHPIVSI 49 Score = 25.8 bits (54), Expect = 2.7 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = +1 Query: 322 MVFEXLLKIIDVMXSYFGKISEENIMNN 405 +V E L +I + YFGK++E + +N Sbjct: 76 IVLEFLESLIQDLTHYFGKLNENTVKDN 103 >SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 426 Score = 34.3 bits (75), Expect = 0.008 Identities = 16/32 (50%), Positives = 21/32 (65%) Frame = +3 Query: 96 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAF 191 M +FV N KG+V+ISR YR DI + V+ F Sbjct: 1 MASAIFVLNLKGKVIISRDYRADIPMSVVEKF 32 Score = 28.7 bits (61), Expect = 0.39 Identities = 12/25 (48%), Positives = 17/25 (68%) Frame = +1 Query: 337 LLKIIDVMXSYFGKISEENIMNNFV 411 L K+ DV YF ++ EE+I +NFV Sbjct: 84 LRKMADVFIDYFKELQEESIRDNFV 108 >SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces pombe|chr 2|||Manual Length = 338 Score = 26.6 bits (56), Expect = 1.6 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +1 Query: 262 PYQACKYLAGSSHKAKCERGMVFEXLL 342 PYQ+ K L H A+ E+G+ FE L Sbjct: 202 PYQSSKRLLDVLHYAELEKGLPFEQYL 228 >SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces pombe|chr 2|||Manual Length = 1040 Score = 26.6 bits (56), Expect = 1.6 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +2 Query: 38 SLNSNYIETNFERV*GLTYNDRRLVRLQP 124 S + N +E+N E+V GL ND ++ L+P Sbjct: 77 SSSLNTMESNIEKVNGLFPNDNSVIALKP 105 >SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 3655 Score = 26.2 bits (55), Expect = 2.1 Identities = 12/36 (33%), Positives = 19/36 (52%) Frame = +3 Query: 201 VIHARQQVRSPVTNIARTLSSISSVQIFGWQQSQSK 308 V+ Q + SP T+I + LS ++F W + Q K Sbjct: 3556 VMSIAQSLSSPTTDIKQYLSLYVRDEVFWWSKQQRK 3591 >SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 878 Score = 25.8 bits (54), Expect = 2.7 Identities = 16/58 (27%), Positives = 28/58 (48%) Frame = +3 Query: 12 YVKFLKGCNR*IAITLKPILKECEASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVD 185 +V ++ G R I + L P+L PT+ +NH G++ + R + G N+ D Sbjct: 737 HVSYVTGVIRSIDLQL-PVLLSKFMKPTIFDSYDFFNHWGQMGVEREAQLTFGLNSKD 793 >SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Schizosaccharomyces pombe|chr 2|||Manual Length = 1001 Score = 25.4 bits (53), Expect = 3.6 Identities = 17/51 (33%), Positives = 25/51 (49%) Frame = +1 Query: 232 LLPTLHAHFLPYQACKYLAGSSHKAKCERGMVFEXLLKIIDVMXSYFGKIS 384 LLP H LP + + S H R M FE L+++ + M + GKI+ Sbjct: 723 LLPNDEFHLLPSAIAEVVLFSKHHDDDLRAMAFELLVEVGNRMKN-GGKIN 772 >SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 728 Score = 24.2 bits (50), Expect = 8.4 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = +3 Query: 132 EVLISRVYRDDIGRNAVDAFRVN 200 E LI VY D RN D R+N Sbjct: 509 EFLIEGVYEDSNSRNKRDLLRIN 531 >SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosaccharomyces pombe|chr 1|||Manual Length = 543 Score = 24.2 bits (50), Expect = 8.4 Identities = 9/17 (52%), Positives = 13/17 (76%) Frame = -3 Query: 171 DQYHLGRLSRSTPRLYG 121 D++ LG SRSTP++ G Sbjct: 26 DEFQLGSSSRSTPQITG 42 >SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|Schizosaccharomyces pombe|chr 2|||Manual Length = 514 Score = 24.2 bits (50), Expect = 8.4 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Frame = +3 Query: 54 TLKP-ILKECEASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS 230 +LKP I+K+ SP+ +GG +++ LI++ D I + V+ + ++ +S Sbjct: 224 SLKPDIIKDFTDSPSKVGGNEEFDYSTGDLITKKEFDKILQQKVEQLKQSLKEEMSNYKS 283 Query: 231 PV 236 V Sbjct: 284 SV 285 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,698,831 Number of Sequences: 5004 Number of extensions: 32722 Number of successful extensions: 84 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 82 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 84 length of database: 2,362,478 effective HSP length: 66 effective length of database: 2,032,214 effective search space used: 148351622 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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