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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0880.Seq
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac...    43   2e-05
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc...    34   0.008
SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces...    27   1.6  
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    27   1.6  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   2.1  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    26   2.7  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    25   3.6  
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    24   8.4  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    24   8.4  
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S...    24   8.4  

>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 446

 Score = 43.2 bits (97), Expect = 2e-05
 Identities = 18/50 (36%), Positives = 31/50 (62%)
 Frame = +3

Query: 96  MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNI 245
           MI GLF++N KG+ LI + +R D+ ++  + FRV ++      R P+ +I
Sbjct: 1   MISGLFIFNLKGDTLICKTFRHDLKKSVTEIFRVAIL-TNTDYRHPIVSI 49



 Score = 25.8 bits (54), Expect = 2.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 322 MVFEXLLKIIDVMXSYFGKISEENIMNN 405
           +V E L  +I  +  YFGK++E  + +N
Sbjct: 76  IVLEFLESLIQDLTHYFGKLNENTVKDN 103


>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 34.3 bits (75), Expect = 0.008
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +3

Query: 96  MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAF 191
           M   +FV N KG+V+ISR YR DI  + V+ F
Sbjct: 1   MASAIFVLNLKGKVIISRDYRADIPMSVVEKF 32



 Score = 28.7 bits (61), Expect = 0.39
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 337 LLKIIDVMXSYFGKISEENIMNNFV 411
           L K+ DV   YF ++ EE+I +NFV
Sbjct: 84  LRKMADVFIDYFKELQEESIRDNFV 108


>SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 338

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 262 PYQACKYLAGSSHKAKCERGMVFEXLL 342
           PYQ+ K L    H A+ E+G+ FE  L
Sbjct: 202 PYQSSKRLLDVLHYAELEKGLPFEQYL 228


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 38  SLNSNYIETNFERV*GLTYNDRRLVRLQP 124
           S + N +E+N E+V GL  ND  ++ L+P
Sbjct: 77  SSSLNTMESNIEKVNGLFPNDNSVIALKP 105


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 201  VIHARQQVRSPVTNIARTLSSISSVQIFGWQQSQSK 308
            V+   Q + SP T+I + LS     ++F W + Q K
Sbjct: 3556 VMSIAQSLSSPTTDIKQYLSLYVRDEVFWWSKQQRK 3591


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = +3

Query: 12  YVKFLKGCNR*IAITLKPILKECEASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVD 185
           +V ++ G  R I + L P+L      PT+      +NH G++ + R  +   G N+ D
Sbjct: 737 HVSYVTGVIRSIDLQL-PVLLSKFMKPTIFDSYDFFNHWGQMGVEREAQLTFGLNSKD 793


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +1

Query: 232 LLPTLHAHFLPYQACKYLAGSSHKAKCERGMVFEXLLKIIDVMXSYFGKIS 384
           LLP    H LP    + +  S H     R M FE L+++ + M +  GKI+
Sbjct: 723 LLPNDEFHLLPSAIAEVVLFSKHHDDDLRAMAFELLVEVGNRMKN-GGKIN 772


>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 132 EVLISRVYRDDIGRNAVDAFRVN 200
           E LI  VY D   RN  D  R+N
Sbjct: 509 EFLIEGVYEDSNSRNKRDLLRIN 531


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 171 DQYHLGRLSRSTPRLYG 121
           D++ LG  SRSTP++ G
Sbjct: 26  DEFQLGSSSRSTPQITG 42


>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
           Sad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 54  TLKP-ILKECEASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS 230
           +LKP I+K+   SP+ +GG   +++    LI++   D I +  V+  + ++       +S
Sbjct: 224 SLKPDIIKDFTDSPSKVGGNEEFDYSTGDLITKKEFDKILQQKVEQLKQSLKEEMSNYKS 283

Query: 231 PV 236
            V
Sbjct: 284 SV 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,698,831
Number of Sequences: 5004
Number of extensions: 32722
Number of successful extensions: 84
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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