Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0880.Seq
(419 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4 |Schizosac... 43 2e-05
SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1 |Schizosacc... 34 0.008
SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces... 27 1.6
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 27 1.6
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 26 2.1
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc... 26 2.7
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 25 3.6
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 24 8.4
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc... 24 8.4
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 24 8.4
>SPAC31A2.09c |apm4||AP-2 adaptor complex subunit Apm4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 446
Score = 43.2 bits (97), Expect = 2e-05
Identities = 18/50 (36%), Positives = 31/50 (62%)
Frame = +3
Query: 96 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNI 245
MI GLF++N KG+ LI + +R D+ ++ + FRV ++ R P+ +I
Sbjct: 1 MISGLFIFNLKGDTLICKTFRHDLKKSVTEIFRVAIL-TNTDYRHPIVSI 49
Score = 25.8 bits (54), Expect = 2.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 322 MVFEXLLKIIDVMXSYFGKISEENIMNN 405
+V E L +I + YFGK++E + +N
Sbjct: 76 IVLEFLESLIQDLTHYFGKLNENTVKDN 103
>SPBP16F5.07 |apm1||AP-1 adaptor complex subunit Apm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 34.3 bits (75), Expect = 0.008
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +3
Query: 96 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAF 191
M +FV N KG+V+ISR YR DI + V+ F
Sbjct: 1 MASAIFVLNLKGKVIISRDYRADIPMSVVEKF 32
Score = 28.7 bits (61), Expect = 0.39
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 337 LLKIIDVMXSYFGKISEENIMNNFV 411
L K+ DV YF ++ EE+I +NFV
Sbjct: 84 LRKMADVFIDYFKELQEESIRDNFV 108
>SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 338
Score = 26.6 bits (56), Expect = 1.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 262 PYQACKYLAGSSHKAKCERGMVFEXLL 342
PYQ+ K L H A+ E+G+ FE L
Sbjct: 202 PYQSSKRLLDVLHYAELEKGLPFEQYL 228
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 26.6 bits (56), Expect = 1.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 38 SLNSNYIETNFERV*GLTYNDRRLVRLQP 124
S + N +E+N E+V GL ND ++ L+P
Sbjct: 77 SSSLNTMESNIEKVNGLFPNDNSVIALKP 105
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.2 bits (55), Expect = 2.1
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 201 VIHARQQVRSPVTNIARTLSSISSVQIFGWQQSQSK 308
V+ Q + SP T+I + LS ++F W + Q K
Sbjct: 3556 VMSIAQSLSSPTTDIKQYLSLYVRDEVFWWSKQQRK 3591
>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 878
Score = 25.8 bits (54), Expect = 2.7
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 12 YVKFLKGCNR*IAITLKPILKECEASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVD 185
+V ++ G R I + L P+L PT+ +NH G++ + R + G N+ D
Sbjct: 737 HVSYVTGVIRSIDLQL-PVLLSKFMKPTIFDSYDFFNHWGQMGVEREAQLTFGLNSKD 793
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 25.4 bits (53), Expect = 3.6
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = +1
Query: 232 LLPTLHAHFLPYQACKYLAGSSHKAKCERGMVFEXLLKIIDVMXSYFGKIS 384
LLP H LP + + S H R M FE L+++ + M + GKI+
Sbjct: 723 LLPNDEFHLLPSAIAEVVLFSKHHDDDLRAMAFELLVEVGNRMKN-GGKIN 772
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 24.2 bits (50), Expect = 8.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +3
Query: 132 EVLISRVYRDDIGRNAVDAFRVN 200
E LI VY D RN D R+N
Sbjct: 509 EFLIEGVYEDSNSRNKRDLLRIN 531
>SPAC12B10.03 |||WD repeat protein, human WDR20
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 24.2 bits (50), Expect = 8.4
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -3
Query: 171 DQYHLGRLSRSTPRLYG 121
D++ LG SRSTP++ G
Sbjct: 26 DEFQLGSSSRSTPQITG 42
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 24.2 bits (50), Expect = 8.4
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 54 TLKP-ILKECEASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRS 230
+LKP I+K+ SP+ +GG +++ LI++ D I + V+ + ++ +S
Sbjct: 224 SLKPDIIKDFTDSPSKVGGNEEFDYSTGDLITKKEFDKILQQKVEQLKQSLKEEMSNYKS 283
Query: 231 PV 236
V
Sbjct: 284 SV 285
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,698,831
Number of Sequences: 5004
Number of extensions: 32722
Number of successful extensions: 84
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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