BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0880.Seq (419 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760... 52 2e-07 02_05_0128 - 26059348-26059437,26059553-26059759 32 0.22 05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467... 31 0.28 01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604... 31 0.28 05_04_0141 - 18364065-18364176,18364722-18364948,18365183-183653... 29 1.1 11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 29 2.0 08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-26... 27 8.1 01_06_1574 + 38337669-38338196 27 8.1 >02_05_0373 + 28374298-28374380,28375126-28375303,28375975-28376065, 28376162-28376256,28376379-28376468,28376789-28376837, 28376941-28377079,28377224-28377340,28377437-28377527, 28377604-28377746,28378009-28378123,28378439-28378483, 28378565-28378645 Length = 438 Score = 51.6 bits (118), Expect = 2e-07 Identities = 21/52 (40%), Positives = 34/52 (65%) Frame = +3 Query: 90 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNI 245 P ++ N +G+VLI+R+YRDD+G N VDAFR++++ ++ PV I Sbjct: 2 PVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTKELGTCPVRQI 53 >02_05_0128 - 26059348-26059437,26059553-26059759 Length = 98 Score = 31.9 bits (69), Expect = 0.22 Identities = 19/63 (30%), Positives = 31/63 (49%) Frame = +3 Query: 72 KECEASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIAR 251 KE E +GGL + E I DD+G++ V++FR V + VR+ + N+ + Sbjct: 27 KELEWRKAQLGGLIRMITEEEDAIFDALHDDLGKHRVESFRDEVGVLAKSVRNTLQNLKK 86 Query: 252 TLS 260 S Sbjct: 87 WAS 89 >05_06_0262 - 26746180-26746278,26746371-26746493,26746584-26746725, 26746824-26746921,26747012-26747108,26747215-26747322, 26747900-26748003,26748170-26748268,26748373-26748435, 26748538-26748687,26748769-26748900 Length = 404 Score = 31.5 bits (68), Expect = 0.28 Identities = 11/40 (27%), Positives = 23/40 (57%) Frame = +1 Query: 292 SSHKAKCERGMVFEXLLKIIDVMXSYFGKISEENIMNNFV 411 ++ + C + L +++DV YF ++ EE++ +NFV Sbjct: 74 TASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFV 113 >01_06_0412 + 29159918-29160046,29160148-29160297,29160385-29160447, 29160540-29160716,29160796-29160899,29162142-29162249, 29162336-29162432,29162540-29162637,29162718-29162859, 29162941-29163063,29163161-29163259 Length = 429 Score = 31.5 bits (68), Expect = 0.28 Identities = 11/40 (27%), Positives = 23/40 (57%) Frame = +1 Query: 292 SSHKAKCERGMVFEXLLKIIDVMXSYFGKISEENIMNNFV 411 ++ + C + L +++DV YF ++ EE++ +NFV Sbjct: 73 TASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFV 112 >05_04_0141 - 18364065-18364176,18364722-18364948,18365183-18365390, 18365497-18365706,18366078-18366180,18366214-18366325, 18367061-18367204,18367835-18367936,18368081-18368186, 18368301-18368335 Length = 452 Score = 29.5 bits (63), Expect = 1.1 Identities = 11/28 (39%), Positives = 19/28 (67%) Frame = +1 Query: 328 FEXLLKIIDVMXSYFGKISEENIMNNFV 411 F+ L ++ DV+ Y G ++E+ I +NFV Sbjct: 98 FQFLSRVADVLTDYLGDLNEDIIKDNFV 125 >11_04_0317 - 16328558-16328612,16328698-16328901,16329794-16330065, 16330152-16330220 Length = 199 Score = 28.7 bits (61), Expect = 2.0 Identities = 12/25 (48%), Positives = 16/25 (64%) Frame = +1 Query: 238 PTLHAHFLPYQACKYLAGSSHKAKC 312 PT HA +LP+ A +Y A KA+C Sbjct: 37 PTKHATYLPHTAGRYSAKRFRKAQC 61 >08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-269805, 269895-270098,271532-271664,271810-271881,273106-273168, 273252-275034,275169-275217 Length = 1229 Score = 26.6 bits (56), Expect = 8.1 Identities = 9/35 (25%), Positives = 16/35 (45%) Frame = +2 Query: 236 YQHCTHTFFHIKRANIWLAAVTKQNVNAAWYLSXC 340 + +C + F+HI+ A+ +Q WY C Sbjct: 1107 HPYCVYKFYHIRCLKTSQLAIEQQKKLGCWYCPSC 1141 >01_06_1574 + 38337669-38338196 Length = 175 Score = 26.6 bits (56), Expect = 8.1 Identities = 11/38 (28%), Positives = 17/38 (44%) Frame = +2 Query: 227 ITCYQHCTHTFFHIKRANIWLAAVTKQNVNAAWYLSXC 340 I + C + F+HI+ A ++Q N WY C Sbjct: 35 ICAHSLCPYKFYHIRCLRYEQIASSEQQGNEYWYCPSC 72 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,857,744 Number of Sequences: 37544 Number of extensions: 214554 Number of successful extensions: 457 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 452 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 457 length of database: 14,793,348 effective HSP length: 75 effective length of database: 11,977,548 effective search space used: 766563072 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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