Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0880.Seq
         (419 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0373 + 28374298-28374380,28375126-28375303,28375975-283760...    52   2e-07
02_05_0128 - 26059348-26059437,26059553-26059759                       32   0.22 
05_06_0262 - 26746180-26746278,26746371-26746493,26746584-267467...    31   0.28 
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604...    31   0.28 
05_04_0141 - 18364065-18364176,18364722-18364948,18365183-183653...    29   1.1  
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300...    29   2.0  
08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-26...    27   8.1  
01_06_1574 + 38337669-38338196                                         27   8.1  

>02_05_0373 +
           28374298-28374380,28375126-28375303,28375975-28376065,
           28376162-28376256,28376379-28376468,28376789-28376837,
           28376941-28377079,28377224-28377340,28377437-28377527,
           28377604-28377746,28378009-28378123,28378439-28378483,
           28378565-28378645
          Length = 438

 Score = 51.6 bits (118), Expect = 2e-07
 Identities = 21/52 (40%), Positives = 34/52 (65%)
 Frame = +3

Query: 90  PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNI 245
           P     ++  N +G+VLI+R+YRDD+G N VDAFR++++  ++    PV  I
Sbjct: 2   PVAASAIYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTKELGTCPVRQI 53


>02_05_0128 - 26059348-26059437,26059553-26059759
          Length = 98

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = +3

Query: 72  KECEASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIAR 251
           KE E     +GGL     + E  I     DD+G++ V++FR  V    + VR+ + N+ +
Sbjct: 27  KELEWRKAQLGGLIRMITEEEDAIFDALHDDLGKHRVESFRDEVGVLAKSVRNTLQNLKK 86

Query: 252 TLS 260
             S
Sbjct: 87  WAS 89


>05_06_0262 -
           26746180-26746278,26746371-26746493,26746584-26746725,
           26746824-26746921,26747012-26747108,26747215-26747322,
           26747900-26748003,26748170-26748268,26748373-26748435,
           26748538-26748687,26748769-26748900
          Length = 404

 Score = 31.5 bits (68), Expect = 0.28
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 292 SSHKAKCERGMVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
           ++ +  C    +   L +++DV   YF ++ EE++ +NFV
Sbjct: 74  TASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFV 113


>01_06_0412 +
           29159918-29160046,29160148-29160297,29160385-29160447,
           29160540-29160716,29160796-29160899,29162142-29162249,
           29162336-29162432,29162540-29162637,29162718-29162859,
           29162941-29163063,29163161-29163259
          Length = 429

 Score = 31.5 bits (68), Expect = 0.28
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +1

Query: 292 SSHKAKCERGMVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
           ++ +  C    +   L +++DV   YF ++ EE++ +NFV
Sbjct: 73  TASRQNCNAASILLFLHRVVDVFKHYFEELEEESLRDNFV 112


>05_04_0141 -
           18364065-18364176,18364722-18364948,18365183-18365390,
           18365497-18365706,18366078-18366180,18366214-18366325,
           18367061-18367204,18367835-18367936,18368081-18368186,
           18368301-18368335
          Length = 452

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 328 FEXLLKIIDVMXSYFGKISEENIMNNFV 411
           F+ L ++ DV+  Y G ++E+ I +NFV
Sbjct: 98  FQFLSRVADVLTDYLGDLNEDIIKDNFV 125


>11_04_0317 -
           16328558-16328612,16328698-16328901,16329794-16330065,
           16330152-16330220
          Length = 199

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 238 PTLHAHFLPYQACKYLAGSSHKAKC 312
           PT HA +LP+ A +Y A    KA+C
Sbjct: 37  PTKHATYLPHTAGRYSAKRFRKAQC 61


>08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-269805,
            269895-270098,271532-271664,271810-271881,273106-273168,
            273252-275034,275169-275217
          Length = 1229

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +2

Query: 236  YQHCTHTFFHIKRANIWLAAVTKQNVNAAWYLSXC 340
            + +C + F+HI+       A+ +Q     WY   C
Sbjct: 1107 HPYCVYKFYHIRCLKTSQLAIEQQKKLGCWYCPSC 1141


>01_06_1574 + 38337669-38338196
          Length = 175

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 227 ITCYQHCTHTFFHIKRANIWLAAVTKQNVNAAWYLSXC 340
           I  +  C + F+HI+       A ++Q  N  WY   C
Sbjct: 35  ICAHSLCPYKFYHIRCLRYEQIASSEQQGNEYWYCPSC 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,857,744
Number of Sequences: 37544
Number of extensions: 214554
Number of successful extensions: 457
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)