Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0880.Seq
(419 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44) 105 1e-23
SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20) 29 1.2
SB_37435| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.7
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14) 28 3.6
SB_53688| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_17727| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12) 27 4.8
SB_4666| Best HMM Match : Exo_endo_phos (HMM E-Value=2.5) 27 4.8
SB_42923| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_23474| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12) 27 4.8
SB_13020| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_44359| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
>SB_24749| Best HMM Match : Adap_comp_sub (HMM E-Value=2.24208e-44)
Length = 331
Score = 105 bits (252), Expect = 1e-23
Identities = 48/53 (90%), Positives = 50/53 (94%)
Frame = +3
Query: 96 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART 254
MIGG F+YNHKGEVLISRVYRDDIGRN VDAFRVNVIHAR Q+RSPVTNIART
Sbjct: 1 MIGGFFIYNHKGEVLISRVYRDDIGRNTVDAFRVNVIHARGQIRSPVTNIART 53
Score = 47.2 bits (107), Expect = 6e-06
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +1
Query: 322 MVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
MVFE L + +D+M SYFGK++EE I NNFV
Sbjct: 77 MVFEFLFRTVDIMMSYFGKVTEEGIKNNFV 106
Score = 43.6 bits (98), Expect = 7e-05
Identities = 16/23 (69%), Positives = 22/23 (95%)
Frame = +2
Query: 254 TFFHIKRANIWLAAVTKQNVNAA 322
+FFHI++ N+W+AAVT+QNVNAA
Sbjct: 54 SFFHIRQGNVWIAAVTRQNVNAA 76
>SB_19443| Best HMM Match : Adap_comp_sub (HMM E-Value=2.2e-20)
Length = 216
Score = 29.5 bits (63), Expect = 1.2
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 301 KAKCERGMVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
K ++F L +++ V YF ++ EE+I +NFV
Sbjct: 17 KKNANVALIFVFLHRMVHVFIDYFKELEEESIRDNFV 53
>SB_37435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 355
Score = 28.3 bits (60), Expect = 2.7
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Frame = +3
Query: 165 IGRNAVDAFRVNVI------HARQQVRSPVTNIARTLSSISSVQIFGWQQSQSK 308
IG AF+ +VI ARQ + + +TNI +T+ S++ FG + SK
Sbjct: 63 IGETKRSAFQQHVIADIKRFFARQGIETAITNILKTVKSLAFTDKFGEVERTSK 116
>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
Length = 1709
Score = 27.9 bits (59), Expect = 3.6
Identities = 8/23 (34%), Positives = 18/23 (78%)
Frame = -2
Query: 310 ILLCDCCQPNICTLDMEESVRAM 242
I++C C+ ++ T+DMEE ++++
Sbjct: 438 IVICPICEADMVTVDMEEQIQSL 460
>SB_53688| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 491
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -1
Query: 227 SHLLASMDHIHSEC-VHSITTNIISVDSRDQHLAFMVVNEQASDHC 93
SH +DHI++ C + +T I++VD D F C
Sbjct: 97 SHTATLIDHIYTNCPISHVTPGILTVDISDHLPIFCTFKSHLKKTC 142
>SB_17727| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)
Length = 648
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -1
Query: 227 SHLLASMDHIHSEC-VHSITTNIISVDSRDQHLAFMVVNEQASDHC 93
SH +DHI++ C + +T I++VD D F C
Sbjct: 268 SHTATLIDHIYTNCPISHVTPGILTVDISDHLPIFCTFKSHLKKTC 313
>SB_4666| Best HMM Match : Exo_endo_phos (HMM E-Value=2.5)
Length = 209
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -1
Query: 227 SHLLASMDHIHSEC-VHSITTNIISVDSRDQHLAFMVVNEQASDHC 93
SH +DHI++ C + +T I++VD D F C
Sbjct: 97 SHTATLIDHIYTNCPISHVTPGILTVDISDHLPIFCTFKSHLKKTC 142
>SB_42923| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 240
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -1
Query: 227 SHLLASMDHIHSEC-VHSITTNIISVDSRDQHLAFMVVNEQASDHC 93
SH +DHI++ C + +T I++VD D F C
Sbjct: 97 SHTATLIDHIYTNCPISHVTPGILTVDISDHLPIFCTFKSHLKKTC 142
>SB_23474| Best HMM Match : Exo_endo_phos (HMM E-Value=2.4e-12)
Length = 623
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -1
Query: 227 SHLLASMDHIHSEC-VHSITTNIISVDSRDQHLAFMVVNEQASDHC 93
SH +DHI++ C + +T I++VD D F C
Sbjct: 470 SHTATLIDHIYTNCPISHVTPGILTVDISDHLPIFCTFKSHLKKTC 515
>SB_13020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 722
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -1
Query: 227 SHLLASMDHIHSEC-VHSITTNIISVDSRDQHLAFMVVNEQASDHC 93
SH +DHI++ C + +T I++VD D F C
Sbjct: 84 SHTATLIDHIYTNCPISHVTPGILTVDISDHLPIFCTFKSHLKKTC 129
>SB_44359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -2
Query: 91 GEASHSFKIGFNVIAIQRLHPFRN 20
G+ H+F+ N Q LHPFR+
Sbjct: 27 GQELHTFRDAHNTFQEQELHPFRD 50
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,914,485
Number of Sequences: 59808
Number of extensions: 258902
Number of successful extensions: 558
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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