Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0880.Seq
(419 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D63475-1|BAA09762.2| 438|Homo sapiens KIAA0109 protein. 113 3e-25
U36188-1|AAA93254.1| 435|Homo sapiens assembly protein 50 protein. 111 7e-25
BT007308-1|AAP35972.1| 435|Homo sapiens adaptor-related protein... 111 7e-25
BC014030-1|AAH14030.1| 435|Homo sapiens adaptor-related protein... 111 7e-25
BC013796-1|AAH13796.1| 433|Homo sapiens adaptor-related protein... 111 7e-25
BC004996-1|AAH04996.1| 435|Homo sapiens adaptor-related protein... 111 7e-25
DQ059565-1|AAY54246.1| 435|Homo sapiens leukemia T cell specifi... 39 0.008
BC017469-1|AAH17469.1| 423|Homo sapiens adaptor-related protein... 39 0.008
AF290613-1|AAK28024.1| 423|Homo sapiens clathrin-associated pro... 39 0.008
AB209808-1|BAD93045.1| 466|Homo sapiens adaptor-related protein... 39 0.008
BC005021-1|AAH05021.1| 425|Homo sapiens adaptor-related protein... 34 0.17
BC003612-1|AAH03612.1| 423|Homo sapiens adaptor-related protein... 34 0.17
BC003387-1|AAH03387.1| 423|Homo sapiens adaptor-related protein... 34 0.17
AK222946-1|BAD96666.1| 423|Homo sapiens adaptor-related protein... 34 0.17
AF020797-1|AAD25870.2| 423|Homo sapiens AP-mu chain family memb... 34 0.17
AK127772-1|BAC87125.1| 1314|Homo sapiens protein ( Homo sapiens ... 32 0.68
AK001657-1|BAA91816.1| 851|Homo sapiens protein ( Homo sapiens ... 29 4.8
D38293-1|BAA07415.1| 418|Homo sapiens clathrin-like protein pro... 29 6.3
BC056398-1|AAH56398.1| 418|Homo sapiens adaptor-related protein... 29 6.3
BC056257-1|AAH56257.1| 273|Homo sapiens AP3M2 protein protein. 29 6.3
>D63475-1|BAA09762.2| 438|Homo sapiens KIAA0109 protein.
Length = 438
Score = 113 bits (271), Expect = 3e-25
Identities = 53/56 (94%), Positives = 54/56 (96%)
Frame = +3
Query: 87 SPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART 254
S MIGGLF+YNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART
Sbjct: 1 SAAMIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART 56
Score = 51.2 bits (117), Expect = 1e-06
Identities = 24/37 (64%), Positives = 26/37 (70%)
Frame = +1
Query: 301 KAKCERGMVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
K MVFE L K+ DVM +YFGKISEENI NNFV
Sbjct: 73 KQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFV 109
Score = 48.8 bits (111), Expect = 7e-06
Identities = 20/23 (86%), Positives = 23/23 (100%)
Frame = +2
Query: 254 TFFHIKRANIWLAAVTKQNVNAA 322
+FFH+KR+NIWLAAVTKQNVNAA
Sbjct: 57 SFFHVKRSNIWLAAVTKQNVNAA 79
>U36188-1|AAA93254.1| 435|Homo sapiens assembly protein 50 protein.
Length = 435
Score = 111 bits (268), Expect = 7e-25
Identities = 52/53 (98%), Positives = 53/53 (100%)
Frame = +3
Query: 96 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART 254
MIGGLF+YNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART 53
Score = 50.0 bits (114), Expect = 3e-06
Identities = 23/37 (62%), Positives = 26/37 (70%)
Frame = +1
Query: 301 KAKCERGMVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
K MVFE L K+ DVM +YFGKISEENI NNF+
Sbjct: 70 KQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFL 106
Score = 48.8 bits (111), Expect = 7e-06
Identities = 20/23 (86%), Positives = 23/23 (100%)
Frame = +2
Query: 254 TFFHIKRANIWLAAVTKQNVNAA 322
+FFH+KR+NIWLAAVTKQNVNAA
Sbjct: 54 SFFHVKRSNIWLAAVTKQNVNAA 76
>BT007308-1|AAP35972.1| 435|Homo sapiens adaptor-related protein
complex 2, mu 1 subunit protein.
Length = 435
Score = 111 bits (268), Expect = 7e-25
Identities = 52/53 (98%), Positives = 53/53 (100%)
Frame = +3
Query: 96 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART 254
MIGGLF+YNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART 53
Score = 51.2 bits (117), Expect = 1e-06
Identities = 24/37 (64%), Positives = 26/37 (70%)
Frame = +1
Query: 301 KAKCERGMVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
K MVFE L K+ DVM +YFGKISEENI NNFV
Sbjct: 70 KQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFV 106
Score = 48.8 bits (111), Expect = 7e-06
Identities = 20/23 (86%), Positives = 23/23 (100%)
Frame = +2
Query: 254 TFFHIKRANIWLAAVTKQNVNAA 322
+FFH+KR+NIWLAAVTKQNVNAA
Sbjct: 54 SFFHVKRSNIWLAAVTKQNVNAA 76
>BC014030-1|AAH14030.1| 435|Homo sapiens adaptor-related protein
complex 2, mu 1 subunit protein.
Length = 435
Score = 111 bits (268), Expect = 7e-25
Identities = 52/53 (98%), Positives = 53/53 (100%)
Frame = +3
Query: 96 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART 254
MIGGLF+YNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART 53
Score = 51.2 bits (117), Expect = 1e-06
Identities = 24/37 (64%), Positives = 26/37 (70%)
Frame = +1
Query: 301 KAKCERGMVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
K MVFE L K+ DVM +YFGKISEENI NNFV
Sbjct: 70 KQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFV 106
Score = 48.8 bits (111), Expect = 7e-06
Identities = 20/23 (86%), Positives = 23/23 (100%)
Frame = +2
Query: 254 TFFHIKRANIWLAAVTKQNVNAA 322
+FFH+KR+NIWLAAVTKQNVNAA
Sbjct: 54 SFFHVKRSNIWLAAVTKQNVNAA 76
>BC013796-1|AAH13796.1| 433|Homo sapiens adaptor-related protein
complex 2, mu 1 subunit protein.
Length = 433
Score = 111 bits (268), Expect = 7e-25
Identities = 52/53 (98%), Positives = 53/53 (100%)
Frame = +3
Query: 96 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART 254
MIGGLF+YNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART 53
Score = 51.2 bits (117), Expect = 1e-06
Identities = 24/37 (64%), Positives = 26/37 (70%)
Frame = +1
Query: 301 KAKCERGMVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
K MVFE L K+ DVM +YFGKISEENI NNFV
Sbjct: 70 KQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFV 106
Score = 48.8 bits (111), Expect = 7e-06
Identities = 20/23 (86%), Positives = 23/23 (100%)
Frame = +2
Query: 254 TFFHIKRANIWLAAVTKQNVNAA 322
+FFH+KR+NIWLAAVTKQNVNAA
Sbjct: 54 SFFHVKRSNIWLAAVTKQNVNAA 76
>BC004996-1|AAH04996.1| 435|Homo sapiens adaptor-related protein
complex 2, mu 1 subunit protein.
Length = 435
Score = 111 bits (268), Expect = 7e-25
Identities = 52/53 (98%), Positives = 53/53 (100%)
Frame = +3
Query: 96 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART 254
MIGGLF+YNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART
Sbjct: 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART 53
Score = 51.2 bits (117), Expect = 1e-06
Identities = 24/37 (64%), Positives = 26/37 (70%)
Frame = +1
Query: 301 KAKCERGMVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
K MVFE L K+ DVM +YFGKISEENI NNFV
Sbjct: 70 KQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFV 106
Score = 48.8 bits (111), Expect = 7e-06
Identities = 20/23 (86%), Positives = 23/23 (100%)
Frame = +2
Query: 254 TFFHIKRANIWLAAVTKQNVNAA 322
+FFH+KR+NIWLAAVTKQNVNAA
Sbjct: 54 SFFHVKRSNIWLAAVTKQNVNAA 76
>DQ059565-1|AAY54246.1| 435|Homo sapiens leukemia T cell specific
adaptor-related protein 1 mu1 subunit protein.
Length = 435
Score = 38.7 bits (86), Expect = 0.008
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +1
Query: 280 YLAGSSHKAKCERGMVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
YL +S K C +VF L K++ V YF ++ EE+I +NFV
Sbjct: 66 YLVATSKKNACV-SLVFSFLYKVVQVFSEYFKELEEESIRDNFV 108
>BC017469-1|AAH17469.1| 423|Homo sapiens adaptor-related protein
complex 1, mu 1 subunit protein.
Length = 423
Score = 38.7 bits (86), Expect = 0.008
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +1
Query: 280 YLAGSSHKAKCERGMVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
YL +S K C +VF L K++ V YF ++ EE+I +NFV
Sbjct: 66 YLVATSKKNACV-SLVFSFLYKVVQVFSEYFKELEEESIRDNFV 108
>AF290613-1|AAK28024.1| 423|Homo sapiens clathrin-associated
protein AP47 protein.
Length = 423
Score = 38.7 bits (86), Expect = 0.008
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +1
Query: 280 YLAGSSHKAKCERGMVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
YL +S K C +VF L K++ V YF ++ EE+I +NFV
Sbjct: 66 YLVATSKKNACV-SLVFSFLYKVVQVFSEYFKELEEESIRDNFV 108
>AB209808-1|BAD93045.1| 466|Homo sapiens adaptor-related protein
complex 1, mu 1 subunit variant protein.
Length = 466
Score = 38.7 bits (86), Expect = 0.008
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +1
Query: 280 YLAGSSHKAKCERGMVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
YL +S K C +VF L K++ V YF ++ EE+I +NFV
Sbjct: 97 YLVATSKKNACV-SLVFSFLYKVVQVFSEYFKELEEESIRDNFV 139
>BC005021-1|AAH05021.1| 425|Homo sapiens adaptor-related protein
complex 1, mu 2 subunit protein.
Length = 425
Score = 34.3 bits (75), Expect = 0.17
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 232 LLPTLHAHFLPYQACK-YLAGSSHKAKCERGMVFEXLLKIIDVMXSYFGKISEENIMNNF 408
LL HFL + YL ++ K +V+ L K I+V YF ++ EE+I +NF
Sbjct: 49 LLSHGQVHFLWIKHSNLYLVATTSK-NANASLVYSFLYKTIEVFCEYFKELEEESIRDNF 107
Query: 409 V 411
V
Sbjct: 108 V 108
>BC003612-1|AAH03612.1| 423|Homo sapiens adaptor-related protein
complex 1, mu 2 subunit protein.
Length = 423
Score = 34.3 bits (75), Expect = 0.17
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 232 LLPTLHAHFLPYQACK-YLAGSSHKAKCERGMVFEXLLKIIDVMXSYFGKISEENIMNNF 408
LL HFL + YL ++ K +V+ L K I+V YF ++ EE+I +NF
Sbjct: 49 LLSHGQVHFLWIKHSNLYLVATTSK-NANASLVYSFLYKTIEVFCEYFKELEEESIRDNF 107
Query: 409 V 411
V
Sbjct: 108 V 108
>BC003387-1|AAH03387.1| 423|Homo sapiens adaptor-related protein
complex 1, mu 2 subunit protein.
Length = 423
Score = 34.3 bits (75), Expect = 0.17
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 232 LLPTLHAHFLPYQACK-YLAGSSHKAKCERGMVFEXLLKIIDVMXSYFGKISEENIMNNF 408
LL HFL + YL ++ K +V+ L K I+V YF ++ EE+I +NF
Sbjct: 49 LLSHGQVHFLWIKHSNLYLVATTSK-NANASLVYSFLYKTIEVFCEYFKELEEESIRDNF 107
Query: 409 V 411
V
Sbjct: 108 V 108
>AK222946-1|BAD96666.1| 423|Homo sapiens adaptor-related protein
complex 1, mu 2 subunit variant protein.
Length = 423
Score = 34.3 bits (75), Expect = 0.17
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 232 LLPTLHAHFLPYQACK-YLAGSSHKAKCERGMVFEXLLKIIDVMXSYFGKISEENIMNNF 408
LL HFL + YL ++ K +V+ L K I+V YF ++ EE+I +NF
Sbjct: 49 LLSHGQVHFLWIKHSNLYLVATTSK-NANASLVYSFLYKTIEVFCEYFKELEEESIRDNF 107
Query: 409 V 411
V
Sbjct: 108 V 108
>AF020797-1|AAD25870.2| 423|Homo sapiens AP-mu chain family member
mu1B protein.
Length = 423
Score = 34.3 bits (75), Expect = 0.17
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 232 LLPTLHAHFLPYQACK-YLAGSSHKAKCERGMVFEXLLKIIDVMXSYFGKISEENIMNNF 408
LL HFL + YL ++ K +V+ L K I+V YF ++ EE+I +NF
Sbjct: 49 LLSHGQVHFLWIKHSNLYLVATTSK-NANASLVYSFLYKTIEVFCEYFKELEEESIRDNF 107
Query: 409 V 411
V
Sbjct: 108 V 108
>AK127772-1|BAC87125.1| 1314|Homo sapiens protein ( Homo sapiens
cDNA FLJ45873 fis, clone OCBBF3006986, weakly similar
to CDC4-like protein. ).
Length = 1314
Score = 32.3 bits (70), Expect = 0.68
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = +1
Query: 220 RCDHLLPTLHAHFLPYQACKYLAGSSHKAKCERGMVFEXLLK 345
RC+ L L H L Y CK L S ERG VF L K
Sbjct: 145 RCEEELLQLLTHILNYVMCKGLEKSDDDTWIERGQVFSALSK 186
>AK001657-1|BAA91816.1| 851|Homo sapiens protein ( Homo sapiens
cDNA FLJ10795 fis, clone NT2RP4000638. ).
Length = 851
Score = 29.5 bits (63), Expect = 4.8
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 111 FVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTLSS 263
F+Y H+ + +Y DD+ NAVDA R++ + + + P AR L S
Sbjct: 605 FLYRHRA---VFPIYLDDVYENAVDAARLHYMFSALRDCVPAMMHARHLES 652
>D38293-1|BAA07415.1| 418|Homo sapiens clathrin-like protein
protein.
Length = 418
Score = 29.1 bits (62), Expect = 6.3
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +1
Query: 232 LLPTLHAHFLPYQACKYLAGSSHKAKCERGMVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
++PT H + L K + + + V E L +++D YFG SE I +N V
Sbjct: 48 VIPTPHHYLLSVYRHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVV 107
>BC056398-1|AAH56398.1| 418|Homo sapiens adaptor-related protein
complex 3, mu 2 subunit protein.
Length = 418
Score = 29.1 bits (62), Expect = 6.3
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +1
Query: 232 LLPTLHAHFLPYQACKYLAGSSHKAKCERGMVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
++PT H + L K + + + V E L +++D YFG SE I +N V
Sbjct: 48 VIPTPHHYLLSVYRHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVV 107
>BC056257-1|AAH56257.1| 273|Homo sapiens AP3M2 protein protein.
Length = 273
Score = 29.1 bits (62), Expect = 6.3
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +1
Query: 232 LLPTLHAHFLPYQACKYLAGSSHKAKCERGMVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
++PT H + L K + + + V E L +++D YFG SE I +N V
Sbjct: 48 VIPTPHHYLLSVYRHKIFFVAVIQTEVPPLFVIEFLHRVVDTFQDYFGVCSEPVIKDNVV 107
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,991,582
Number of Sequences: 237096
Number of extensions: 1153680
Number of successful extensions: 2510
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2508
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3202085264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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