Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0880.Seq
(419 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L26290-1|AAA27981.1| 441|Caenorhabditis elegans clathrin-associ... 107 4e-24
AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : short... 107 4e-24
AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : short... 107 4e-24
AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin, mu/m... 34 0.036
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 32 0.19
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 32 0.19
U80027-19|AAC48129.2| 313|Caenorhabditis elegans F-box a protei... 28 2.4
AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta... 27 4.1
U64598-7|AAK39218.3| 523|Caenorhabditis elegans Twik family of ... 26 9.5
AY255664-1|AAQ96601.1| 523|Caenorhabditis elegans two-P domain ... 26 9.5
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 26 9.5
>L26290-1|AAA27981.1| 441|Caenorhabditis elegans
clathrin-associated protein homologueprotein.
Length = 441
Score = 107 bits (256), Expect = 4e-24
Identities = 49/53 (92%), Positives = 52/53 (98%)
Frame = +3
Query: 96 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART 254
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNVIHARQQVRSPVTN+ART
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQVRSPVTNMART 53
Score = 44.4 bits (100), Expect = 3e-05
Identities = 16/23 (69%), Positives = 21/23 (91%)
Frame = +2
Query: 254 TFFHIKRANIWLAAVTKQNVNAA 322
+FFH+KR N+W+ AVT+QNVNAA
Sbjct: 54 SFFHVKRGNVWICAVTRQNVNAA 76
Score = 43.2 bits (97), Expect = 8e-05
Identities = 18/30 (60%), Positives = 22/30 (73%)
Frame = +1
Query: 322 MVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
MVF L + D M SYFGK++EEN+ NNFV
Sbjct: 77 MVFAFLKRFADTMQSYFGKLNEENVKNNFV 106
>AF099001-8|AAP13778.1| 435|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform b protein.
Length = 435
Score = 107 bits (256), Expect = 4e-24
Identities = 49/53 (92%), Positives = 52/53 (98%)
Frame = +3
Query: 96 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART 254
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNVIHARQQVRSPVTN+ART
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQVRSPVTNMART 53
Score = 45.6 bits (103), Expect = 1e-05
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +1
Query: 322 MVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
MVFE L + D M SYFGK++EEN+ NNFV
Sbjct: 77 MVFEFLKRFADTMQSYFGKLNEENVKNNFV 106
Score = 44.4 bits (100), Expect = 3e-05
Identities = 16/23 (69%), Positives = 21/23 (91%)
Frame = +2
Query: 254 TFFHIKRANIWLAAVTKQNVNAA 322
+FFH+KR N+W+ AVT+QNVNAA
Sbjct: 54 SFFHVKRGNVWICAVTRQNVNAA 76
>AF099001-7|AAP13777.1| 441|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 23, isoform a protein.
Length = 441
Score = 107 bits (256), Expect = 4e-24
Identities = 49/53 (92%), Positives = 52/53 (98%)
Frame = +3
Query: 96 MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIART 254
MIGGLFVYNHKGEVLISR+YRDD+ RNAVDAFRVNVIHARQQVRSPVTN+ART
Sbjct: 1 MIGGLFVYNHKGEVLISRIYRDDVTRNAVDAFRVNVIHARQQVRSPVTNMART 53
Score = 45.6 bits (103), Expect = 1e-05
Identities = 19/30 (63%), Positives = 23/30 (76%)
Frame = +1
Query: 322 MVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
MVFE L + D M SYFGK++EEN+ NNFV
Sbjct: 77 MVFEFLKRFADTMQSYFGKLNEENVKNNFV 106
Score = 44.4 bits (100), Expect = 3e-05
Identities = 16/23 (69%), Positives = 21/23 (91%)
Frame = +2
Query: 254 TFFHIKRANIWLAAVTKQNVNAA 322
+FFH+KR N+W+ AVT+QNVNAA
Sbjct: 54 SFFHVKRGNVWICAVTRQNVNAA 76
>AF003130-2|AAB54125.2| 426|Caenorhabditis elegans Adaptin,
mu/medium chain (clathrinassociated complex) protein 1
protein.
Length = 426
Score = 34.3 bits (75), Expect = 0.036
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 99 IGGLFVYNHKGEVLISRVYRDDIGRNAVDAF 191
I GLF+ + KG V+ISR YR D+ + ++ F
Sbjct: 3 ISGLFILDLKGNVVISRNYRGDVDMSCIEKF 33
Score = 29.9 bits (64), Expect = 0.77
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 322 MVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
+V L KI++V YF + EE + +NFV
Sbjct: 79 LVLSALYKIVEVFCEYFKTLEEEAVRDNFV 108
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 31.9 bits (69), Expect = 0.19
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 108 LFVYNHKGEVLISRVYRDDIGRNAVDAF 191
+F+ + KG+ +ISR YR DI A+D F
Sbjct: 6 MFILDLKGKTIISRNYRGDIDMTAIDKF 33
Score = 30.3 bits (65), Expect = 0.58
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 322 MVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
M+ L K ++V YF + EE++ +NFV
Sbjct: 79 MILSFLYKCVEVFSEYFKDVEEESVRDNFV 108
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +2
Query: 218 AGAITCYQHCTHTFFHIKRANIWLAAVTKQNVNAAWYLSXC*RSLM*CXRILARFLK 388
A + YQ F IK NI+L + + NVN LS L C + + + K
Sbjct: 46 AAPVLTYQDTNFVF--IKHTNIYLVSACRSNVNVTMILSF----LYKCVEVFSEYFK 96
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 31.9 bits (69), Expect = 0.19
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +3
Query: 108 LFVYNHKGEVLISRVYRDDIGRNAVDAF 191
+F+ + KG+ +ISR YR DI A+D F
Sbjct: 6 MFILDLKGKTIISRNYRGDIDMTAIDKF 33
Score = 30.3 bits (65), Expect = 0.58
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 322 MVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
M+ L K ++V YF + EE++ +NFV
Sbjct: 79 MILSFLYKCVEVFSEYFKDVEEESVRDNFV 108
Score = 26.6 bits (56), Expect = 7.2
Identities = 17/57 (29%), Positives = 24/57 (42%)
Frame = +2
Query: 218 AGAITCYQHCTHTFFHIKRANIWLAAVTKQNVNAAWYLSXC*RSLM*CXRILARFLK 388
A + YQ F IK NI+L + + NVN LS L C + + + K
Sbjct: 46 AAPVLTYQDTNFVF--IKHTNIYLVSACRSNVNVTMILSF----LYKCVEVFSEYFK 96
>U80027-19|AAC48129.2| 313|Caenorhabditis elegans F-box a protein
protein 64 protein.
Length = 313
Score = 28.3 bits (60), Expect = 2.4
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 81 EASPTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIH 209
+++P I +F ++ G S Y DDI + A+D FRV H
Sbjct: 264 QSNPVDIAKVFKPDYVGGNEYSFEYSDDIHKFAIDCFRVGESH 306
>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
family protein 3 protein.
Length = 1092
Score = 27.5 bits (58), Expect = 4.1
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = -1
Query: 260 RKCACNVGNR*SHLLASMDHIHSECVHSITTNIISVDSRDQHLAFMVVNEQASDHCR*GL 81
R C GNR +H L ++ + +C+ + I + R +AF V N++ D R
Sbjct: 151 RGCPIIFGNRLAHFLPTLKVVLEKCMATPDLQIKATAVR-AVIAFAVDNDEEKDVVRLMT 209
Query: 80 TLFQNWFQ-CN 51
+L N Q CN
Sbjct: 210 SLVPNVLQVCN 220
>U64598-7|AAK39218.3| 523|Caenorhabditis elegans Twik family of
potassium channelsprotein 28 protein.
Length = 523
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 339 QXLKYHAAFTFCFVTAASQIFARLI 265
+ L+Y AF FCF+T A+ F ++
Sbjct: 312 EHLEYFEAFYFCFITMATVGFGDIV 336
>AY255664-1|AAQ96601.1| 523|Caenorhabditis elegans two-P domain K
channel protein.
Length = 523
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 339 QXLKYHAAFTFCFVTAASQIFARLI 265
+ L+Y AF FCF+T A+ F ++
Sbjct: 312 EHLEYFEAFYFCFITMATVGFGDIV 336
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = -2
Query: 151 TLEINTSPLWL*TNKPPIIVGEASHSFKIGFNVIAIQRLHPFRNLT*CR 5
T+++ T+ W NK P+ V +A+ K+GF+ + L P N CR
Sbjct: 105 TIDLITT--WSENNKLPLAVHKAALLNKLGFSSNCVLLLAPLINSLVCR 151
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,504,008
Number of Sequences: 27780
Number of extensions: 189652
Number of successful extensions: 488
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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