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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0880.Seq
         (419 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   0.80 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.8  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    21   5.6  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    21   5.6  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    21   5.6  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    21   5.6  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   9.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   9.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   9.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   9.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   9.9  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.8 bits (49), Expect = 0.80
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 114 VYNHKGEVLISRV--YRDDIGRNAVDAFRVNVIHARQQVRSPV 236
           V N+ G V    +  Y D+  R A+D F+  + +  ++ RSPV
Sbjct: 297 VNNYMGPVATKAMKGYSDEDLREAIDEFKTPMRNDSERNRSPV 339


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 7/26 (26%), Positives = 13/26 (50%)
 Frame = -2

Query: 283 NICTLDMEESVRAMLVTGDRTCWRAW 206
           ++C+L  E       V G++ CW  +
Sbjct: 585 SVCSLPCEVGQAKKYVAGEQCCWHCF 610


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 38  SLNSNYIETNFERV*GLTYNDRRLVRLQ 121
           SL++NY  +N+       YN+    +LQ
Sbjct: 84  SLSNNYKYSNYNNYNNNNYNNNNYKKLQ 111


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 38  SLNSNYIETNFERV*GLTYNDRRLVRLQ 121
           SL++NY  +N+       YN+    +LQ
Sbjct: 84  SLSNNYKYSNYNNYNNNNYNNNNYKKLQ 111


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 38  SLNSNYIETNFERV*GLTYNDRRLVRLQ 121
           SL++NY  +N+       YN+    +LQ
Sbjct: 84  SLSNNYKYSNYNNYNNNNYNNNNYKKLQ 111


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +2

Query: 38  SLNSNYIETNFERV*GLTYNDRRLVRLQ 121
           SL++NY  +N+       YN+    +LQ
Sbjct: 84  SLSNNYKYSNYNNYNNNNYNNNNYKKLQ 111


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -2

Query: 310 ILLCDCCQPNICT 272
           I+ C  C PN CT
Sbjct: 424 IVTCTNCGPNPCT 436


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -2

Query: 310 ILLCDCCQPNICT 272
           I+ C  C PN CT
Sbjct: 410 IVTCTNCGPNPCT 422


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -2

Query: 310 ILLCDCCQPNICT 272
           I+ C  C PN CT
Sbjct: 444 IVTCTNCGPNPCT 456


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -2

Query: 310 ILLCDCCQPNICT 272
           I+ C  C PN CT
Sbjct: 393 IVTCTNCGPNPCT 405


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -2

Query: 304 LCDCCQPNICTLDM 263
           LC CC  + C  +M
Sbjct: 746 LCHCCDFDACDCEM 759


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,691
Number of Sequences: 438
Number of extensions: 2107
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)

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