BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0880.Seq (419 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 24 0.80 AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 23 1.8 DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex det... 21 5.6 DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex det... 21 5.6 DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex det... 21 5.6 DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex det... 21 5.6 DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 20 9.9 DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 20 9.9 DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 20 9.9 DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 20 9.9 AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 20 9.9 >DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride channel protein. Length = 383 Score = 23.8 bits (49), Expect = 0.80 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Frame = +3 Query: 114 VYNHKGEVLISRV--YRDDIGRNAVDAFRVNVIHARQQVRSPV 236 V N+ G V + Y D+ R A+D F+ + + ++ RSPV Sbjct: 297 VNNYMGPVATKAMKGYSDEDLREAIDEFKTPMRNDSERNRSPV 339 >AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate receptor protein. Length = 1040 Score = 22.6 bits (46), Expect = 1.8 Identities = 7/26 (26%), Positives = 13/26 (50%) Frame = -2 Query: 283 NICTLDMEESVRAMLVTGDRTCWRAW 206 ++C+L E V G++ CW + Sbjct: 585 SVCSLPCEVGQAKKYVAGEQCCWHCF 610 >DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex determiner protein. Length = 185 Score = 21.0 bits (42), Expect = 5.6 Identities = 9/28 (32%), Positives = 15/28 (53%) Frame = +2 Query: 38 SLNSNYIETNFERV*GLTYNDRRLVRLQ 121 SL++NY +N+ YN+ +LQ Sbjct: 84 SLSNNYKYSNYNNYNNNNYNNNNYKKLQ 111 >DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex determiner protein. Length = 185 Score = 21.0 bits (42), Expect = 5.6 Identities = 9/28 (32%), Positives = 15/28 (53%) Frame = +2 Query: 38 SLNSNYIETNFERV*GLTYNDRRLVRLQ 121 SL++NY +N+ YN+ +LQ Sbjct: 84 SLSNNYKYSNYNNYNNNNYNNNNYKKLQ 111 >DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex determiner protein. Length = 185 Score = 21.0 bits (42), Expect = 5.6 Identities = 9/28 (32%), Positives = 15/28 (53%) Frame = +2 Query: 38 SLNSNYIETNFERV*GLTYNDRRLVRLQ 121 SL++NY +N+ YN+ +LQ Sbjct: 84 SLSNNYKYSNYNNYNNNNYNNNNYKKLQ 111 >DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex determiner protein. Length = 185 Score = 21.0 bits (42), Expect = 5.6 Identities = 9/28 (32%), Positives = 15/28 (53%) Frame = +2 Query: 38 SLNSNYIETNFERV*GLTYNDRRLVRLQ 121 SL++NY +N+ YN+ +LQ Sbjct: 84 SLSNNYKYSNYNNYNNNNYNNNNYKKLQ 111 >DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride channel variant 4 protein. Length = 489 Score = 20.2 bits (40), Expect = 9.9 Identities = 7/13 (53%), Positives = 8/13 (61%) Frame = -2 Query: 310 ILLCDCCQPNICT 272 I+ C C PN CT Sbjct: 424 IVTCTNCGPNPCT 436 >DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride channel variant 3 protein. Length = 475 Score = 20.2 bits (40), Expect = 9.9 Identities = 7/13 (53%), Positives = 8/13 (61%) Frame = -2 Query: 310 ILLCDCCQPNICT 272 I+ C C PN CT Sbjct: 410 IVTCTNCGPNPCT 422 >DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride channel variant 1 protein. Length = 509 Score = 20.2 bits (40), Expect = 9.9 Identities = 7/13 (53%), Positives = 8/13 (61%) Frame = -2 Query: 310 ILLCDCCQPNICT 272 I+ C C PN CT Sbjct: 444 IVTCTNCGPNPCT 456 >DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride channel protein. Length = 458 Score = 20.2 bits (40), Expect = 9.9 Identities = 7/13 (53%), Positives = 8/13 (61%) Frame = -2 Query: 310 ILLCDCCQPNICT 272 I+ C C PN CT Sbjct: 393 IVTCTNCGPNPCT 405 >AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor protein. Length = 1370 Score = 20.2 bits (40), Expect = 9.9 Identities = 6/14 (42%), Positives = 8/14 (57%) Frame = -2 Query: 304 LCDCCQPNICTLDM 263 LC CC + C +M Sbjct: 746 LCHCCDFDACDCEM 759 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 112,691 Number of Sequences: 438 Number of extensions: 2107 Number of successful extensions: 11 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 11 length of database: 146,343 effective HSP length: 52 effective length of database: 123,567 effective search space used: 10750329 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 40 (21.2 bits)
- SilkBase 1999-2023 -