Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0880.Seq
(419 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 24 0.80
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 23 1.8
DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex det... 21 5.6
DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex det... 21 5.6
DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex det... 21 5.6
DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex det... 21 5.6
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 20 9.9
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 20 9.9
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 20 9.9
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 20 9.9
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 20 9.9
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 23.8 bits (49), Expect = 0.80
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 114 VYNHKGEVLISRV--YRDDIGRNAVDAFRVNVIHARQQVRSPV 236
V N+ G V + Y D+ R A+D F+ + + ++ RSPV
Sbjct: 297 VNNYMGPVATKAMKGYSDEDLREAIDEFKTPMRNDSERNRSPV 339
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 22.6 bits (46), Expect = 1.8
Identities = 7/26 (26%), Positives = 13/26 (50%)
Frame = -2
Query: 283 NICTLDMEESVRAMLVTGDRTCWRAW 206
++C+L E V G++ CW +
Sbjct: 585 SVCSLPCEVGQAKKYVAGEQCCWHCF 610
>DQ325113-1|ABD14127.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.0 bits (42), Expect = 5.6
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +2
Query: 38 SLNSNYIETNFERV*GLTYNDRRLVRLQ 121
SL++NY +N+ YN+ +LQ
Sbjct: 84 SLSNNYKYSNYNNYNNNNYNNNNYKKLQ 111
>DQ325112-1|ABD14126.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.0 bits (42), Expect = 5.6
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +2
Query: 38 SLNSNYIETNFERV*GLTYNDRRLVRLQ 121
SL++NY +N+ YN+ +LQ
Sbjct: 84 SLSNNYKYSNYNNYNNNNYNNNNYKKLQ 111
>DQ325111-1|ABD14125.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.0 bits (42), Expect = 5.6
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +2
Query: 38 SLNSNYIETNFERV*GLTYNDRRLVRLQ 121
SL++NY +N+ YN+ +LQ
Sbjct: 84 SLSNNYKYSNYNNYNNNNYNNNNYKKLQ 111
>DQ325110-1|ABD14124.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 21.0 bits (42), Expect = 5.6
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +2
Query: 38 SLNSNYIETNFERV*GLTYNDRRLVRLQ 121
SL++NY +N+ YN+ +LQ
Sbjct: 84 SLSNNYKYSNYNNYNNNNYNNNNYKKLQ 111
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 20.2 bits (40), Expect = 9.9
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -2
Query: 310 ILLCDCCQPNICT 272
I+ C C PN CT
Sbjct: 424 IVTCTNCGPNPCT 436
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 20.2 bits (40), Expect = 9.9
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -2
Query: 310 ILLCDCCQPNICT 272
I+ C C PN CT
Sbjct: 410 IVTCTNCGPNPCT 422
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 20.2 bits (40), Expect = 9.9
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -2
Query: 310 ILLCDCCQPNICT 272
I+ C C PN CT
Sbjct: 444 IVTCTNCGPNPCT 456
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 20.2 bits (40), Expect = 9.9
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -2
Query: 310 ILLCDCCQPNICT 272
I+ C C PN CT
Sbjct: 393 IVTCTNCGPNPCT 405
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 20.2 bits (40), Expect = 9.9
Identities = 6/14 (42%), Positives = 8/14 (57%)
Frame = -2
Query: 304 LCDCCQPNICTLDM 263
LC CC + C +M
Sbjct: 746 LCHCCDFDACDCEM 759
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,691
Number of Sequences: 438
Number of extensions: 2107
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
- SilkBase 1999-2023 -