Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0880.Seq
(419 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g46630.2 68418.m05740 clathrin adaptor complexes medium subun... 51 3e-07
At5g46630.1 68418.m05741 clathrin adaptor complexes medium subun... 51 3e-07
At5g23700.1 68418.m02778 hypothetical protein 30 0.55
At1g60780.1 68414.m06842 clathrin adaptor complexes medium subun... 30 0.55
At1g10730.1 68414.m01223 clathrin adaptor complexes medium subun... 30 0.55
At1g56590.1 68414.m06508 clathrin adaptor complexes medium subun... 30 0.73
At5g01270.1 68418.m00036 double-stranded RNA-binding domain (DsR... 27 3.9
At5g40480.1 68418.m04909 expressed protein ; expression supporte... 27 5.2
At4g24550.2 68417.m03519 clathrin adaptor complexes medium subun... 27 6.8
At4g24550.1 68417.m03518 clathrin adaptor complexes medium subun... 27 6.8
At1g67000.1 68414.m07618 protein kinase family protein contains ... 26 9.0
>At5g46630.2 68418.m05740 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 441
Score = 51.2 bits (117), Expect = 3e-07
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = +3
Query: 90 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNI 245
P ++ N +G+VLI+R YRDD+G N VDAFR +++ ++ PV I
Sbjct: 2 PVAASAIYFLNLRGDVLINRTYRDDVGGNMVDAFRTHIMQTKELGNCPVRQI 53
>At5g46630.1 68418.m05741 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 438
Score = 51.2 bits (117), Expect = 3e-07
Identities = 21/52 (40%), Positives = 32/52 (61%)
Frame = +3
Query: 90 PTMIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNI 245
P ++ N +G+VLI+R YRDD+G N VDAFR +++ ++ PV I
Sbjct: 2 PVAASAIYFLNLRGDVLINRTYRDDVGGNMVDAFRTHIMQTKELGNCPVRQI 53
>At5g23700.1 68418.m02778 hypothetical protein
Length = 572
Score = 30.3 bits (65), Expect = 0.55
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = -2
Query: 196 TLNASTALRPISSR*TLEINTSPLWL*TN---KPPIIVGEASHSFK 68
++ +S+ RP + + N SPLW+ KPP+I+ HSFK
Sbjct: 118 SVRSSSTGRPSTFSRSSTPNASPLWMPPKASLKPPVIIPPIDHSFK 163
>At1g60780.1 68414.m06842 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 30.3 bits (65), Expect = 0.55
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 301 KAKCERGMVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
+ C + L +++DV YF ++ EE++ +NFV
Sbjct: 75 RQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFV 111
>At1g10730.1 68414.m01223 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 428
Score = 30.3 bits (65), Expect = 0.55
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 301 KAKCERGMVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
+ C + L +++DV YF ++ EE++ +NFV
Sbjct: 75 RQNCNAASLLFFLHRVVDVFKHYFEELEEESLRDNFV 111
>At1g56590.1 68414.m06508 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 415
Score = 29.9 bits (64), Expect = 0.73
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 322 MVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
M E L ++ DV+ Y G ++E+ I +NF+
Sbjct: 79 MAIEFLCRVADVLSEYLGGLNEDLIKDNFI 108
>At5g01270.1 68418.m00036 double-stranded RNA-binding domain
(DsRBD)-containing protein contains Pfam profile
PF00035: Double-stranded RNA binding motif
Length = 771
Score = 27.5 bits (58), Expect = 3.9
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = -1
Query: 203 HIHSECVHSITTNIISVDSRDQHLAFMVVNEQ 108
H+H+ C H + T ++ + + HL M E+
Sbjct: 81 HLHAVCFHELKTAVVMLGDEEIHLVAMPSKEK 112
>At5g40480.1 68418.m04909 expressed protein ; expression supported by
MPSS
Length = 1919
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 123 HKGEVLISRVYRDDIGRNAVDAFRVNVIHARQ 218
+KG + IS + RDD G ++VNV+ + Q
Sbjct: 1757 NKGRLSISLIKRDDFGIAGHAQYKVNVLRSEQ 1788
>At4g24550.2 68417.m03519 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 451
Score = 26.6 bits (56), Expect = 6.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 322 MVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
+V E L +I V+ Y G ++E++ NFV
Sbjct: 81 LVLELLQRIARVIKDYLGVLNEDSFRKNFV 110
>At4g24550.1 68417.m03518 clathrin adaptor complexes medium subunit
family protein contains Pfam profile: PF00928 adaptor
complexes medium subunit family
Length = 380
Score = 26.6 bits (56), Expect = 6.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 322 MVFEXLLKIIDVMXSYFGKISEENIMNNFV 411
+V E L +I V+ Y G ++E++ NFV
Sbjct: 81 LVLELLQRIARVIKDYLGVLNEDSFRKNFV 110
>At1g67000.1 68414.m07618 protein kinase family protein contains
protein kinase domain, Pfam:PF00069; contains
serine/threonine protein kinase domain,
INTERPRO:IPR002290
Length = 717
Score = 26.2 bits (55), Expect = 9.0
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Frame = +2
Query: 182 GRIQSECDPCSPAGAITC--YQH 244
G QS C+ SP+G ++C YQH
Sbjct: 68 GTTQSCCNATSPSGGVSCVPYQH 90
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,799,235
Number of Sequences: 28952
Number of extensions: 169574
Number of successful extensions: 374
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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