Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0878.Seq
(329 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 29 0.24
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 26 1.3
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss... 25 2.2
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 25 3.9
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p... 24 5.2
SPCC757.03c |||ThiJ domain protein|Schizosaccharomyces pombe|chr... 24 5.2
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 24 5.2
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 24 6.8
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 24 6.8
SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2 |... 24 6.8
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces... 23 9.0
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 23 9.0
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 28.7 bits (61), Expect = 0.24
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -2
Query: 319 SVDYQIPLCKSVPDSLC*FEALCISLDFCVRRPGHSNELYRCLIPSCAN 173
++DY +PL +V + EA+C +LDF + + +P N
Sbjct: 1496 AIDYSVPLVTNVKCAKLMIEAICRNLDFSLSTVDFQSSFQTANLPGLIN 1544
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 26.2 bits (55), Expect = 1.3
Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +2
Query: 149 YGIIDTKIICATWNKTPVEFIAVSGPPYTEVQA---NAKSFESTKGIWHRFTQRNLIINR 319
Y I + + W ++ ++ V P+ E +A N K FE G+ H+F Q I+
Sbjct: 244 YEIFQKRRVIEEWKESVLD---VLDTPFDEAKASSRNPKPFEFPDGVTHKFGQERFRISE 300
Query: 320 PL 325
L
Sbjct: 301 IL 302
>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 2.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 214 SNELYRCLIPSCANNFCIDNTVW 146
S+ Y C PSC N+FC+D V+
Sbjct: 385 SSMRYAC--PSCKNHFCLDCDVF 405
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 24.6 bits (51), Expect = 3.9
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -3
Query: 150 YGFL*WSTMSPLTPITVEYPLASNSLMSPTSTVS 49
YGFL WS S + I + L SL T++ S
Sbjct: 484 YGFLTWSMGSQIPGIITAFTLLLASLCKNTTSAS 517
>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 539
Score = 24.2 bits (50), Expect = 5.2
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 324 NGRLIIKFLCVNRC-QIPFVDSKLFALAWTS 235
NG+ + ++ V C PF+ + L AWTS
Sbjct: 402 NGKSVPEWRLVGMCIASPFIPTGLLIFAWTS 432
>SPCC757.03c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 24.2 bits (50), Expect = 5.2
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 312 IIKFLCVNRCQIPFVDSKLFALAWTSV*GGPDTAMNSTGVL 190
++ +C +PFVD + V G TA NSTG L
Sbjct: 134 VLAAVCHGPVMLPFVDDTKSPEGRSVVYGKKVTAFNSTGEL 174
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 24.2 bits (50), Expect = 5.2
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 122 DIVDHHKKPYGIIDTKIICATWNKTPVEFIAVSGPPYTE 238
D + H KK +G+ + K+I T + + + + PPY +
Sbjct: 487 DPLQHMKKIFGVDNIKLINYTSSPSGSKKFVMWNPPYVD 525
>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 338
Score = 23.8 bits (49), Expect = 6.8
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 51 IPWMLVTLMSLKQVGIQQ*WELEETSSTIIRSHTVLSIQKL 173
I W+ T S+ Q + W L S+ + +TV +IQ +
Sbjct: 245 IEWVFSTWCSIFQKYLMNNWHLRSISTLEVLLNTVSTIQSV 285
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 23.8 bits (49), Expect = 6.8
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 211 NELYRCLIPSCANNFCIDNT--VWLLMMVDDVSSNS 110
NEL ++P +FC++ T +W+ + +D +S
Sbjct: 2 NELKHAVVPIDLQSFCLEGTLALWVPALENDSEDDS 37
>SPAC3G9.06 |frs2||phenylalanine-tRNA ligase alpha subunit Frs2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 499
Score = 23.8 bits (49), Expect = 6.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 84 KQVGIQQ*WELEETSSTIIRSHT 152
K +G + + LEET ++R+HT
Sbjct: 307 KGIGYRAPFSLEETRKLVLRTHT 329
>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 693
Score = 23.4 bits (48), Expect = 9.0
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -2
Query: 175 NNFCIDNTVWL 143
N FCIDNT++L
Sbjct: 307 NQFCIDNTLFL 317
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 23.4 bits (48), Expect = 9.0
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = -2
Query: 91 TCFKLINVTNIHGIVLR 41
+ F+ ++NIHG+V+R
Sbjct: 369 SAFRFFEMSNIHGLVIR 385
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,309,682
Number of Sequences: 5004
Number of extensions: 24867
Number of successful extensions: 70
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -