Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0878.Seq
         (329 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0132 + 22998941-22999073,22999218-22999347,23000257-230009...    28   2.0  
11_06_0354 - 22605903-22606145,22606239-22606442,22607227-226074...    26   6.2  
07_01_1173 + 11092482-11093465,11093552-11093914                       26   6.2  
07_03_1747 + 29188568-29188715,29188793-29189541                       26   8.3  

>04_04_0132 +
           22998941-22999073,22999218-22999347,23000257-23000950,
           23001545-23001580,23003165-23003446
          Length = 424

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -3

Query: 120 PLTPITVEYPLASNSLMSPTSTVSFSE 40
           P  P +     A++ L SPTST+SFSE
Sbjct: 196 PAPPASAAAAAAAHGLDSPTSTLSFSE 222


>11_06_0354 -
           22605903-22606145,22606239-22606442,22607227-22607490,
           22607945-22608142,22608238-22608498,22608977-22609183,
           22610004-22610207,22610455-22610520,22610717-22610949,
           22610982-22611051,22611109-22611136,22611243-22611367,
           22611950-22612051
          Length = 734

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +2

Query: 77  EFEASGYSTVMGVRGDIVDHHKKPYGIIDTKIICATWNKTPVEFIAVSGPPY 232
           +F  S Y T  G+ G I      PYG+I T +   T  +T   +  V G P+
Sbjct: 347 QFSLSEYLT--GISGTIAS---SPYGVIITSLTLVTNTRTYGPYGQVGGTPF 393


>07_01_1173 + 11092482-11093465,11093552-11093914
          Length = 448

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 312 IIKFLCVNRCQIPFVDSKLFALAWTS 235
           ++KFLC N C+  ++ S+   L W S
Sbjct: 386 VMKFLCANDCKPTWLASQKRQLCWES 411


>07_03_1747 + 29188568-29188715,29188793-29189541
          Length = 298

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 125 IVDHHKKPYGIIDTKIICATWNKTPVEFIAVSG-PPYTEVQA 247
           +VD H  P  + D+    A W +     ++V+G PP T   A
Sbjct: 179 VVDAHHPPLAMADSNDSAAMWQQHQAPQMSVAGAPPPTTTMA 220


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,079,696
Number of Sequences: 37544
Number of extensions: 148439
Number of successful extensions: 361
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)