BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0878.Seq (329 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_04_0132 + 22998941-22999073,22999218-22999347,23000257-230009... 28 2.0 11_06_0354 - 22605903-22606145,22606239-22606442,22607227-226074... 26 6.2 07_01_1173 + 11092482-11093465,11093552-11093914 26 6.2 07_03_1747 + 29188568-29188715,29188793-29189541 26 8.3 >04_04_0132 + 22998941-22999073,22999218-22999347,23000257-23000950, 23001545-23001580,23003165-23003446 Length = 424 Score = 27.9 bits (59), Expect = 2.0 Identities = 13/27 (48%), Positives = 17/27 (62%) Frame = -3 Query: 120 PLTPITVEYPLASNSLMSPTSTVSFSE 40 P P + A++ L SPTST+SFSE Sbjct: 196 PAPPASAAAAAAAHGLDSPTSTLSFSE 222 >11_06_0354 - 22605903-22606145,22606239-22606442,22607227-22607490, 22607945-22608142,22608238-22608498,22608977-22609183, 22610004-22610207,22610455-22610520,22610717-22610949, 22610982-22611051,22611109-22611136,22611243-22611367, 22611950-22612051 Length = 734 Score = 26.2 bits (55), Expect = 6.2 Identities = 17/52 (32%), Positives = 24/52 (46%) Frame = +2 Query: 77 EFEASGYSTVMGVRGDIVDHHKKPYGIIDTKIICATWNKTPVEFIAVSGPPY 232 +F S Y T G+ G I PYG+I T + T +T + V G P+ Sbjct: 347 QFSLSEYLT--GISGTIAS---SPYGVIITSLTLVTNTRTYGPYGQVGGTPF 393 >07_01_1173 + 11092482-11093465,11093552-11093914 Length = 448 Score = 26.2 bits (55), Expect = 6.2 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = -3 Query: 312 IIKFLCVNRCQIPFVDSKLFALAWTS 235 ++KFLC N C+ ++ S+ L W S Sbjct: 386 VMKFLCANDCKPTWLASQKRQLCWES 411 >07_03_1747 + 29188568-29188715,29188793-29189541 Length = 298 Score = 25.8 bits (54), Expect = 8.3 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Frame = +2 Query: 125 IVDHHKKPYGIIDTKIICATWNKTPVEFIAVSG-PPYTEVQA 247 +VD H P + D+ A W + ++V+G PP T A Sbjct: 179 VVDAHHPPLAMADSNDSAAMWQQHQAPQMSVAGAPPPTTTMA 220 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,079,696 Number of Sequences: 37544 Number of extensions: 148439 Number of successful extensions: 361 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 355 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 361 length of database: 14,793,348 effective HSP length: 72 effective length of database: 12,090,180 effective search space used: 447336660 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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