Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0878.Seq
         (329 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)                  29   1.2  
SB_20788| Best HMM Match : IATP (HMM E-Value=4.8)                      27   2.8  
SB_23799| Best HMM Match : PAN (HMM E-Value=0.0007)                    24   3.6  
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_51600| Best HMM Match : RNA_pol_I_A49 (HMM E-Value=0.0013)          27   3.7  
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.7  
SB_8425| Best HMM Match : EGF (HMM E-Value=0)                          27   3.7  
SB_21594| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.5  
SB_6077| Best HMM Match : EGF (HMM E-Value=0)                          26   6.5  
SB_31972| Best HMM Match : RVT_1 (HMM E-Value=2.4e-14)                 26   8.5  
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.5  
SB_1479| Best HMM Match : OTU (HMM E-Value=0.34)                       26   8.5  
SB_53064| Best HMM Match : Hexapep (HMM E-Value=2.7e-07)               26   8.5  

>SB_12148| Best HMM Match : DUF827 (HMM E-Value=0.044)
          Length = 933

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = +2

Query: 35  HRSENDTVDVGDINEFEASGYSTVMGVRGDIVDHHKKP 148
           H    +T DVGD  E E     +V     DIV H   P
Sbjct: 136 HEGTKETSDVGDRKEKETPQEGSVKSTPADIVVHESSP 173


>SB_20788| Best HMM Match : IATP (HMM E-Value=4.8)
          Length = 336

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 10/13 (76%), Positives = 13/13 (100%)
 Frame = +3

Query: 210 LLCPGRLTQKSKL 248
           LLCPGR+++KSKL
Sbjct: 127 LLCPGRMSEKSKL 139


>SB_23799| Best HMM Match : PAN (HMM E-Value=0.0007)
          Length = 279

 Score = 24.2 bits (50), Expect(2) = 3.6
 Identities = 13/61 (21%), Positives = 26/61 (42%)
 Frame = +2

Query: 68  DINEFEASGYSTVMGVRGDIVDHHKKPYGIIDTKIICATWNKTPVEFIAVSGPPYTEVQA 247
           D+  F   G++ V+ +    +DH +K        + C T+ +T +    +S     E+  
Sbjct: 115 DMERF-GGGWTLVVTINASNMDHLQKAENNCADSVACVTFTETDIPGRKLSDEDIHEIAG 173

Query: 248 N 250
           N
Sbjct: 174 N 174



 Score = 21.4 bits (43), Expect(2) = 3.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 20  NLTENHRSENDTVDVGDINEFEAS 91
           ++T+NHRS + T D  +   FE S
Sbjct: 60  HVTQNHRSLHATNDFHEKPPFEES 83


>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1229

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 16/69 (23%), Positives = 33/69 (47%)
 Frame = +2

Query: 17   NNLTENHRSENDTVDVGDINEFEASGYSTVMGVRGDIVDHHKKPYGIIDTKIICATWNKT 196
            + LT +  S+ +  ++  +N       ST++ +   +   +     I++T  I A  + T
Sbjct: 945  STLTLSTISDTNLPNITTVNRTTVPTNSTLVEILPSMPTMNLTSVPILNTSSIVANLSAT 1004

Query: 197  PVEFIAVSG 223
            P+ F +VSG
Sbjct: 1005 PISFASVSG 1013


>SB_51600| Best HMM Match : RNA_pol_I_A49 (HMM E-Value=0.0013)
          Length = 258

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +2

Query: 155 IIDTKIICATWNKTPVEFIAVSGPPYTEVQANAKSFESTK 274
           ++DT ++ A        F  ++ P Y  ++  AK  E++K
Sbjct: 91  VLDTTVVNAVKGSLNASFTVITPPEYETIRGPAKELEASK 130


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 132  STMSPLTPITVEYPLASNSLMSPTSTVS 49
            ST++P T +T E  +A  + M+P +TVS
Sbjct: 4427 STLAPETTMTPEITVAPKTTMAPETTVS 4454


>SB_8425| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1955

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = -2

Query: 307 QIPLCKSVPDSLC*FEALCISLDF---CVRRPGHSNELYRCLIPSCANNFCIDN 155
           ++  C S P   C    LC SL     C  RPG S +     I  CA N C++N
Sbjct: 546 KMDFCVSAP---CKNGGLCRSLQDKFQCNCRPGFSGDRCEIDIDDCAKNPCLNN 596


>SB_21594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1075

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 77   EFEASGYSTVMGVRGDIVDHHKKPYGIIDTKIICATWN 190
            EF++S  S V   +G +     KPY +I   ++ +  N
Sbjct: 1027 EFDSSDVSNVFNAKGKVCHSVTKPYALIWGSVLASPLN 1064


>SB_6077| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1165

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
 Frame = -2

Query: 313 DYQIPLCKSVPDSLC*FEALC---ISLDFCVRRPGHSNELYRCLIPSCANNFCIDNTVWL 143
           D  I  C+S P   C   + C   +S   C+ +PG++ +     I  C +  C++N + L
Sbjct: 327 DVDIDECQSNP---CQHGSACMDGVSSYQCICQPGYTGQYCHIDIDECLSRPCLNNGMCL 383

Query: 142 LMMVDDVSSNSHYC*IPTCF 83
                D+ S+ H C  PT F
Sbjct: 384 -----DLVSDFH-CTCPTGF 397


>SB_31972| Best HMM Match : RVT_1 (HMM E-Value=2.4e-14)
          Length = 1242

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +2

Query: 137  HKKPYGIIDTKIICATWNKTPVEFIAVSGPPY 232
            H+   G++ TK + A W +  V+F  ++   Y
Sbjct: 935  HEGHQGLVKTKSLLAPWTEVSVDFAELASKEY 966


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 132 STMSPLTPITVEYPLASNSLMSPTSTVS 49
           ST+ PLT    E  +A  + +SP STV+
Sbjct: 400 STVEPLTTAASESTVAPGTTLSPESTVA 427


>SB_1479| Best HMM Match : OTU (HMM E-Value=0.34)
          Length = 554

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 99  QQ*WELEETSSTIIRSHTVLSIQKLFAQLGIRHL 200
           Q+ WEL E SS +  +     +  L++ LG+R L
Sbjct: 25  QESWELYEISSGLTANEEKFQVATLYSVLGLRVL 58


>SB_53064| Best HMM Match : Hexapep (HMM E-Value=2.7e-07)
          Length = 585

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 132 STMSPLTPITVEYPLASNSLMSPTSTVS 49
           ST+ PLT    E  +A  + +SP STV+
Sbjct: 372 STVEPLTTAASESTVAPGTTLSPESTVA 399


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,750,282
Number of Sequences: 59808
Number of extensions: 185502
Number of successful extensions: 553
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 551
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 463065397
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)