Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0878.Seq
         (329 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC029579-1|AAH29579.1|  434|Homo sapiens F-box protein 15 protein.     29   2.6  
BC109121-1|AAI09122.1|  711|Homo sapiens F-box protein 34 protein.     29   4.6  
BC109120-1|AAI09121.1|  711|Homo sapiens F-box protein 34 protein.     29   4.6  
BC095482-1|AAH95482.2|  711|Homo sapiens F-box protein 34 protein.     29   4.6  
BC130547-1|AAI30548.1|  161|Homo sapiens GIY-YIG domain containi...    28   6.0  
BC130545-1|AAI30546.1|  161|Homo sapiens GIY-YIG domain containi...    28   6.0  
BC069007-1|AAH69007.1|  161|Homo sapiens GIY-YIG domain containi...    28   6.0  
BC019306-1|AAH19306.1|  275|Homo sapiens GIY-YIG domain containi...    28   6.0  
BC015990-1|AAH15990.1|  275|Homo sapiens GIY-YIG domain containi...    28   6.0  
BC000803-1|AAH00803.1|  275|Homo sapiens GIY-YIG domain containi...    28   6.0  
BC000754-1|AAH00754.1|  275|Homo sapiens GIY-YIG domain containi...    28   6.0  
M22299-1|AAB02844.1|  570|Homo sapiens T-plastin polypeptide pro...    28   8.0  
BC056898-1|AAH56898.1|  630|Homo sapiens plastin 3 (T isoform) p...    28   8.0  
BC039049-1|AAH39049.1|  630|Homo sapiens plastin 3 (T isoform) p...    28   8.0  
BC035579-1|AAH35579.1|  542|Homo sapiens zinc finger protein 100...    28   8.0  
BC031248-1|AAH31248.1|  596|Homo sapiens ZNF100 protein protein.       28   8.0  
BC008588-1|AAH08588.1|  409|Homo sapiens Similar to plastin 3 (T...    28   8.0  
AL589842-1|CAI39884.1|  627|Homo sapiens plastin 3 (T isoform) p...    28   8.0  
AK222801-1|BAD96521.1|  630|Homo sapiens plastin 3 variant protein.    28   8.0  

>BC029579-1|AAH29579.1|  434|Homo sapiens F-box protein 15 protein.
          Length = 434

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/64 (25%), Positives = 29/64 (45%)
 Frame = +2

Query: 125 IVDHHKKPYGIIDTKIICATWNKTPVEFIAVSGPPYTEVQANAKSFESTKGIWHRFTQRN 304
           ++D H KP+    + + C     TP +  +  G  Y     +A+     + +W R T+  
Sbjct: 354 LLDEHGKPFWCFSSPV-CLRSPATPSDSSSFLGQTYNVDYVDAEGRVHVELVWIRETEEY 412

Query: 305 LIIN 316
           LI+N
Sbjct: 413 LIVN 416


>BC109121-1|AAI09122.1|  711|Homo sapiens F-box protein 34 protein.
          Length = 711

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 140 KKPYGIIDTKIICATWNKTPVE 205
           +KP+GI+   ++C+   K+PVE
Sbjct: 59  RKPFGILSPNVLCSMSGKSPVE 80


>BC109120-1|AAI09121.1|  711|Homo sapiens F-box protein 34 protein.
          Length = 711

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 140 KKPYGIIDTKIICATWNKTPVE 205
           +KP+GI+   ++C+   K+PVE
Sbjct: 59  RKPFGILSPNVLCSMSGKSPVE 80


>BC095482-1|AAH95482.2|  711|Homo sapiens F-box protein 34 protein.
          Length = 711

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 140 KKPYGIIDTKIICATWNKTPVE 205
           +KP+GI+   ++C+   K+PVE
Sbjct: 59  RKPFGILSPNVLCSMSGKSPVE 80


>BC130547-1|AAI30548.1|  161|Homo sapiens GIY-YIG domain containing
           2 protein.
          Length = 161

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = -2

Query: 313 DYQIPLCKSVPDSLC*FEALCISLDFCVRRPGHSNELY-RCLIPSCANNFCIDNTVWLLM 137
           D + PLC   P  L     +C++ +F    PG    L  +C  P C  +    + +WL  
Sbjct: 81  DEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQC--PCCEKSLLWGDLIWLCQ 138

Query: 136 M 134
           M
Sbjct: 139 M 139


>BC130545-1|AAI30546.1|  161|Homo sapiens GIY-YIG domain containing
           2 protein.
          Length = 161

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = -2

Query: 313 DYQIPLCKSVPDSLC*FEALCISLDFCVRRPGHSNELY-RCLIPSCANNFCIDNTVWLLM 137
           D + PLC   P  L     +C++ +F    PG    L  +C  P C  +    + +WL  
Sbjct: 81  DEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQC--PCCEKSLLWGDLIWLCQ 138

Query: 136 M 134
           M
Sbjct: 139 M 139


>BC069007-1|AAH69007.1|  161|Homo sapiens GIY-YIG domain containing
           2 protein.
          Length = 161

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = -2

Query: 313 DYQIPLCKSVPDSLC*FEALCISLDFCVRRPGHSNELY-RCLIPSCANNFCIDNTVWLLM 137
           D + PLC   P  L     +C++ +F    PG    L  +C  P C  +    + +WL  
Sbjct: 81  DEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQC--PCCEKSLLWGDLIWLCQ 138

Query: 136 M 134
           M
Sbjct: 139 M 139


>BC019306-1|AAH19306.1|  275|Homo sapiens GIY-YIG domain containing
           2 protein.
          Length = 275

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = -2

Query: 313 DYQIPLCKSVPDSLC*FEALCISLDFCVRRPGHSNELY-RCLIPSCANNFCIDNTVWLLM 137
           D + PLC   P  L     +C++ +F    PG    L  +C  P C  +    + +WL  
Sbjct: 195 DEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQC--PCCEKSLLWGDLIWLCQ 252

Query: 136 M 134
           M
Sbjct: 253 M 253


>BC015990-1|AAH15990.1|  275|Homo sapiens GIY-YIG domain containing
           2 protein.
          Length = 275

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = -2

Query: 313 DYQIPLCKSVPDSLC*FEALCISLDFCVRRPGHSNELY-RCLIPSCANNFCIDNTVWLLM 137
           D + PLC   P  L     +C++ +F    PG    L  +C  P C  +    + +WL  
Sbjct: 195 DEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQC--PCCEKSLLWGDLIWLCQ 252

Query: 136 M 134
           M
Sbjct: 253 M 253


>BC000803-1|AAH00803.1|  275|Homo sapiens GIY-YIG domain containing
           2 protein.
          Length = 275

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = -2

Query: 313 DYQIPLCKSVPDSLC*FEALCISLDFCVRRPGHSNELY-RCLIPSCANNFCIDNTVWLLM 137
           D + PLC   P  L     +C++ +F    PG    L  +C  P C  +    + +WL  
Sbjct: 195 DEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQC--PCCEKSLLWGDLIWLCQ 252

Query: 136 M 134
           M
Sbjct: 253 M 253


>BC000754-1|AAH00754.1|  275|Homo sapiens GIY-YIG domain containing
           2 protein.
          Length = 275

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = -2

Query: 313 DYQIPLCKSVPDSLC*FEALCISLDFCVRRPGHSNELY-RCLIPSCANNFCIDNTVWLLM 137
           D + PLC   P  L     +C++ +F    PG    L  +C  P C  +    + +WL  
Sbjct: 195 DEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQC--PCCEKSLLWGDLIWLCQ 252

Query: 136 M 134
           M
Sbjct: 253 M 253


>M22299-1|AAB02844.1|  570|Homo sapiens T-plastin polypeptide
           protein.
          Length = 570

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 191 KTPVEFIAVSGPPYTEVQANAKSFES 268
           K PV++  V+ PPY ++ AN K  E+
Sbjct: 377 KVPVDWSKVNKPPYPKLGANMKKLEN 402


>BC056898-1|AAH56898.1|  630|Homo sapiens plastin 3 (T isoform)
           protein.
          Length = 630

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 191 KTPVEFIAVSGPPYTEVQANAKSFES 268
           K PV++  V+ PPY ++ AN K  E+
Sbjct: 437 KVPVDWSKVNKPPYPKLGANMKKLEN 462


>BC039049-1|AAH39049.1|  630|Homo sapiens plastin 3 (T isoform)
           protein.
          Length = 630

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 191 KTPVEFIAVSGPPYTEVQANAKSFES 268
           K PV++  V+ PPY ++ AN K  E+
Sbjct: 437 KVPVDWSKVNKPPYPKLGANMKKLEN 462


>BC035579-1|AAH35579.1|  542|Homo sapiens zinc finger protein 100
           protein.
          Length = 542

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 253 CISLDFCVRRPGHSNELYRCLIPSCANNFCID 158
           C S+D C     H N+L +CLI + +N F  D
Sbjct: 149 CKSVDECKVHKEHDNKLNQCLITTQSNIFQCD 180


>BC031248-1|AAH31248.1|  596|Homo sapiens ZNF100 protein protein.
          Length = 596

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 253 CISLDFCVRRPGHSNELYRCLIPSCANNFCID 158
           C S+D C     H N+L +CLI + +N F  D
Sbjct: 203 CKSVDECKVHKEHDNKLNQCLITTQSNIFQCD 234


>BC008588-1|AAH08588.1|  409|Homo sapiens Similar to plastin 3 (T
           isoform) protein.
          Length = 409

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 191 KTPVEFIAVSGPPYTEVQANAKSFES 268
           K PV++  V+ PPY ++ AN K  E+
Sbjct: 216 KVPVDWSKVNKPPYPKLGANMKKLEN 241


>AL589842-1|CAI39884.1|  627|Homo sapiens plastin 3 (T isoform)
           protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 191 KTPVEFIAVSGPPYTEVQANAKSFES 268
           K PV++  V+ PPY ++ AN K  E+
Sbjct: 434 KVPVDWSKVNKPPYPKLGANMKKLEN 459


>AK222801-1|BAD96521.1|  630|Homo sapiens plastin 3 variant protein.
          Length = 630

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 191 KTPVEFIAVSGPPYTEVQANAKSFES 268
           K PV++  V+ PPY ++ AN K  E+
Sbjct: 437 KVPVDWSKVNKPPYPKLGANMKKLEN 462


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,267,400
Number of Sequences: 237096
Number of extensions: 823765
Number of successful extensions: 1746
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1743
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1743854340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)