Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0878.Seq
         (329 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64842-2|AAB37084.1|  462|Caenorhabditis elegans Hypothetical pr...    28   1.8  
U12787-1|AAA92672.1|  458|Caenorhabditis elegans HMG CoA synthas...    28   1.8  
U70853-1|AAB09143.2|  439|Caenorhabditis elegans Hypothetical pr...    27   3.2  
AF025453-2|AAM98052.1|  225|Caenorhabditis elegans Hypothetical ...    27   3.2  
AF025453-1|AAK31407.1|  520|Caenorhabditis elegans Hypothetical ...    27   3.2  
AF016417-4|AAB65282.1|  451|Caenorhabditis elegans Hypothetical ...    26   5.5  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    26   7.3  
AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical ...    26   7.3  
AF000263-6|AAO21394.1|  496|Caenorhabditis elegans Phenylalanyl ...    26   7.3  
AF000263-5|AAG00015.1|  552|Caenorhabditis elegans Phenylalanyl ...    26   7.3  
Z68749-6|CAC35818.1|  689|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z68749-5|CAC35817.1|  712|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z68219-7|CAC35827.1|  689|Caenorhabditis elegans Hypothetical pr...    25   9.7  
Z68219-6|CAC35826.1|  712|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U88184-3|AAK31519.1|  648|Caenorhabditis elegans Hypothetical pr...    25   9.7  
AF070477-1|AAC24035.1|  589|Caenorhabditis elegans fibulin-1D pr...    25   9.7  
AF051403-2|AAC28323.1|  712|Caenorhabditis elegans fibulin-1 iso...    25   9.7  
AF051403-1|AAC28324.1|  689|Caenorhabditis elegans fibulin-1 iso...    25   9.7  
AF051402-1|AAC28322.1|  712|Caenorhabditis elegans fibulin-1 iso...    25   9.7  
AF051401-1|AAC28321.1|  689|Caenorhabditis elegans fibulin-1 iso...    25   9.7  
AB212860-1|BAD98165.1|  712|Caenorhabditis elegans fibulin-1C pr...    25   9.7  

>U64842-2|AAB37084.1|  462|Caenorhabditis elegans Hypothetical
           protein F25B4.6 protein.
          Length = 462

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 135 WSTMSPLTPITVEYPLASNSL 73
           W    P+TPI  EYP+   SL
Sbjct: 198 WDFFKPITPIPSEYPVVDGSL 218


>U12787-1|AAA92672.1|  458|Caenorhabditis elegans HMG CoA synthase
           protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 135 WSTMSPLTPITVEYPLASNSL 73
           W    P+TPI  EYP+   SL
Sbjct: 194 WDFFKPITPIPSEYPVVDGSL 214


>U70853-1|AAB09143.2|  439|Caenorhabditis elegans Hypothetical
           protein M01H9.2 protein.
          Length = 439

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = -2

Query: 262 EALC--ISLDFCVRRPGHSNELYRCLIPSCANNFCIDN 155
           E +C  ++ D C+ RPG+  +L      +C+   CID+
Sbjct: 288 EVICKHVTADTCLSRPGYYLKLCPVTCKNCSGYQCIDS 325


>AF025453-2|AAM98052.1|  225|Caenorhabditis elegans Hypothetical
           protein C08F1.4b protein.
          Length = 225

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 2   KLMRQNNLTENHRSENDTVDV-GDINEFEASGY 97
           KLM+   L  NH   ND+V V  D+N F  +GY
Sbjct: 6   KLMKWEKLVSNHLV-NDSVTVEADLNVFNLAGY 37


>AF025453-1|AAK31407.1|  520|Caenorhabditis elegans Hypothetical
           protein C08F1.4a protein.
          Length = 520

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 2   KLMRQNNLTENHRSENDTVDV-GDINEFEASGY 97
           KLM+   L  NH   ND+V V  D+N F  +GY
Sbjct: 6   KLMKWEKLVSNHLV-NDSVTVEADLNVFNLAGY 37


>AF016417-4|AAB65282.1|  451|Caenorhabditis elegans Hypothetical
           protein F17A9.5 protein.
          Length = 451

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/46 (19%), Positives = 26/46 (56%)
 Frame = +2

Query: 104 VMGVRGDIVDHHKKPYGIIDTKIICATWNKTPVEFIAVSGPPYTEV 241
           ++G++ + V+   +   + D KI+C  +    V+F+ ++G  + ++
Sbjct: 246 LVGIKTNSVEFQSEGLTLEDAKIMCQVYEDKGVDFVELTGGTFEKL 291


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
            protein Y8A9A.2 protein.
          Length = 1360

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = -2

Query: 319  SVDYQIPLCKSVPDSLC*FEALCIS--LDFCVRRPGHSNELYRCLIPSCANNFCIDNTVW 146
            SV+  I +C    DS C   +  +S     C  +P ++   Y    P+C +N C +  +W
Sbjct: 950  SVNCGITVCYFPDDSCCAGYSATVSGTQHICGPQPNYTTP-YAPYDPTCTDNCCPETGIW 1008


>AF016419-9|AAG24054.1| 2025|Caenorhabditis elegans Hypothetical
           protein F07G11.9 protein.
          Length = 2025

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 285 CQIPFVDSKLFALAWTSV*GGPDTAMN 205
           C IP+V SK +   WT +  G D+  N
Sbjct: 8   CLIPWVSSKAYCTKWTEIKSG-DSCWN 33


>AF000263-6|AAO21394.1|  496|Caenorhabditis elegans Phenylalanyl (f)
           trna synthetaseprotein 1, isoform b protein.
          Length = 496

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = +3

Query: 108 WELEETSSTIIRSH-TVLSIQKLF--AQLGIR 194
           W++EE    ++R+H T +S ++L+  AQ G R
Sbjct: 314 WKIEEAQKNVLRTHTTAVSARQLYQLAQEGFR 345


>AF000263-5|AAG00015.1|  552|Caenorhabditis elegans Phenylalanyl (f)
           trna synthetaseprotein 1, isoform a protein.
          Length = 552

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = +3

Query: 108 WELEETSSTIIRSH-TVLSIQKLF--AQLGIR 194
           W++EE    ++R+H T +S ++L+  AQ G R
Sbjct: 370 WKIEEAQKNVLRTHTTAVSARQLYQLAQEGFR 401


>Z68749-6|CAC35818.1|  689|Caenorhabditis elegans Hypothetical
           protein F56H11.1b protein.
          Length = 689

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -2

Query: 253 CISLDFCVRRPGHSNELYRCLIPSCANNFCIDNTVWLLMMVDDVSSNSHYC 101
           C+    C+  PG S +  R L  SC   + +D+       VD+ +  SH C
Sbjct: 206 CLESQRCLNTPG-SFKCIRTL--SCGTGYAMDSETERCRDVDECNLGSHDC 253


>Z68749-5|CAC35817.1|  712|Caenorhabditis elegans Hypothetical
           protein F56H11.1a protein.
          Length = 712

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -2

Query: 253 CISLDFCVRRPGHSNELYRCLIPSCANNFCIDNTVWLLMMVDDVSSNSHYC 101
           C+    C+  PG S +  R L  SC   + +D+       VD+ +  SH C
Sbjct: 206 CLESQRCLNTPG-SFKCIRTL--SCGTGYAMDSETERCRDVDECNLGSHDC 253


>Z68219-7|CAC35827.1|  689|Caenorhabditis elegans Hypothetical
           protein F56H11.1b protein.
          Length = 689

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -2

Query: 253 CISLDFCVRRPGHSNELYRCLIPSCANNFCIDNTVWLLMMVDDVSSNSHYC 101
           C+    C+  PG S +  R L  SC   + +D+       VD+ +  SH C
Sbjct: 206 CLESQRCLNTPG-SFKCIRTL--SCGTGYAMDSETERCRDVDECNLGSHDC 253


>Z68219-6|CAC35826.1|  712|Caenorhabditis elegans Hypothetical
           protein F56H11.1a protein.
          Length = 712

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -2

Query: 253 CISLDFCVRRPGHSNELYRCLIPSCANNFCIDNTVWLLMMVDDVSSNSHYC 101
           C+    C+  PG S +  R L  SC   + +D+       VD+ +  SH C
Sbjct: 206 CLESQRCLNTPG-SFKCIRTL--SCGTGYAMDSETERCRDVDECNLGSHDC 253


>U88184-3|AAK31519.1|  648|Caenorhabditis elegans Hypothetical
           protein F36H5.8 protein.
          Length = 648

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 23  LTENHRSENDTVDVGDINEFEASG-YSTVMGV 115
           LT NHR     V+ GD  E +  G Y +++G+
Sbjct: 432 LTNNHRLNKLIVEAGDNQEIDMDGFYRSLIGL 463


>AF070477-1|AAC24035.1|  589|Caenorhabditis elegans fibulin-1D
           precursor protein.
          Length = 589

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -2

Query: 253 CISLDFCVRRPGHSNELYRCLIPSCANNFCIDNTVWLLMMVDDVSSNSHYC 101
           C+    C+  PG S +  R L  SC   + +D+       VD+ +  SH C
Sbjct: 106 CLESQRCLNTPG-SFKCIRTL--SCGTGYAMDSETERCRDVDECNLGSHDC 153


>AF051403-2|AAC28323.1|  712|Caenorhabditis elegans fibulin-1
           isoform C precursor protein.
          Length = 712

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -2

Query: 253 CISLDFCVRRPGHSNELYRCLIPSCANNFCIDNTVWLLMMVDDVSSNSHYC 101
           C+    C+  PG S +  R L  SC   + +D+       VD+ +  SH C
Sbjct: 206 CLESQRCLNTPG-SFKCIRTL--SCGTGYAMDSETERCRDVDECNLGSHDC 253


>AF051403-1|AAC28324.1|  689|Caenorhabditis elegans fibulin-1
           isoform D precursor protein.
          Length = 689

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -2

Query: 253 CISLDFCVRRPGHSNELYRCLIPSCANNFCIDNTVWLLMMVDDVSSNSHYC 101
           C+    C+  PG S +  R L  SC   + +D+       VD+ +  SH C
Sbjct: 206 CLESQRCLNTPG-SFKCIRTL--SCGTGYAMDSETERCRDVDECNLGSHDC 253


>AF051402-1|AAC28322.1|  712|Caenorhabditis elegans fibulin-1
           isoform C precursor protein.
          Length = 712

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -2

Query: 253 CISLDFCVRRPGHSNELYRCLIPSCANNFCIDNTVWLLMMVDDVSSNSHYC 101
           C+    C+  PG S +  R L  SC   + +D+       VD+ +  SH C
Sbjct: 206 CLESQRCLNTPG-SFKCIRTL--SCGTGYAMDSETERCRDVDECNLGSHDC 253


>AF051401-1|AAC28321.1|  689|Caenorhabditis elegans fibulin-1
           isoform D precursor protein.
          Length = 689

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -2

Query: 253 CISLDFCVRRPGHSNELYRCLIPSCANNFCIDNTVWLLMMVDDVSSNSHYC 101
           C+    C+  PG S +  R L  SC   + +D+       VD+ +  SH C
Sbjct: 206 CLESQRCLNTPG-SFKCIRTL--SCGTGYAMDSETERCRDVDECNLGSHDC 253


>AB212860-1|BAD98165.1|  712|Caenorhabditis elegans fibulin-1C
           protein.
          Length = 712

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -2

Query: 253 CISLDFCVRRPGHSNELYRCLIPSCANNFCIDNTVWLLMMVDDVSSNSHYC 101
           C+    C+  PG S +  R L  SC   + +D+       VD+ +  SH C
Sbjct: 206 CLESQRCLNTPG-SFKCIRTL--SCGTGYAMDSETERCRDVDECNLGSHDC 253


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,207,950
Number of Sequences: 27780
Number of extensions: 139990
Number of successful extensions: 430
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)