Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0878.Seq
         (329 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   1.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   3.9  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   5.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   8.9  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 265 INKGNLAPIYTKEFDNQPTIN 327
           +NK N A IYT   ++  T+N
Sbjct: 522 VNKRNNAKIYTSSVNSNLTVN 542


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 54  PWMLVTLMSLKQVGI 98
           PW+LVTL+ L  V +
Sbjct: 63  PWILVTLIVLAIVNV 77


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 131 DHHKKPYGIIDTKIICATWN 190
           DH   PY I++  I  A+W+
Sbjct: 162 DHTWWPYDILNCTIHIASWS 181


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = -2

Query: 157 NTVWLLMMV 131
           NT+W+L+MV
Sbjct: 566 NTLWILVMV 574


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,687
Number of Sequences: 438
Number of extensions: 1505
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)