Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0878.Seq
         (329 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18310.1 68416.m02330 expressed protein                             27   4.0  
At1g01020.1 68414.m00002 transmembrane ARV1-like family protein ...    27   4.0  
At3g23860.1 68416.m02999 GTP-binding protein-related low similar...    25   9.3  
At3g16940.1 68416.m02165 calmodulin-binding protein similar to a...    25   9.3  
At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi...    25   9.3  

>At3g18310.1 68416.m02330 expressed protein
          Length = 873

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +2

Query: 170 IICATWNKTPVEFIAVSGPPYTEVQANAKSFESTKGIWHRFTQRNLIINR 319
           I+  T + TP  F++VSG P ++  A   SF+ +    H  T R L  NR
Sbjct: 57  ILSITPHLTPARFLSVSGVPPSDSSAINSSFKISNP--HDDTVRVLSYNR 104


>At1g01020.1 68414.m00002 transmembrane ARV1-like family protein
           contains similarity to ARV1 [Homo sapiens]
           gi|12044055|gb|AAG47671
          Length = 128

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 295 CKSVPDSLC*FEALCISLDFCVRRPG-HSNELYRCLIPSCANNFCIDNTVWLLM 137
           CK V D     E + I +D  + RP  + + LY  + P+  N   I + +W L+
Sbjct: 35  CKEVADEYIECERMIIFIDLILHRPKVYRHVLYNAINPATVN---IQHLLWKLV 85


>At3g23860.1 68416.m02999 GTP-binding protein-related low similarity
           to SP|Q99ME9 Nucleolar GTP-binding protein 1 (Chronic
           renal failure gene protein) {Mus musculus}
          Length = 230

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 313 DYQIPLCKSVPDSLC 269
           +YQIP C  +PD +C
Sbjct: 26  EYQIPNCTLIPDRVC 40


>At3g16940.1 68416.m02165 calmodulin-binding protein similar to
           anther ethylene-upregulated protein ER1 GI:11612392 from
           [Nicotiana tabacum]; contains Pfam profile: PF00612 IQ
           calmodulin-binding motif (3 copies)
          Length = 852

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 253 CISLDFCVRRPGHSNELYRCLIP 185
           C+  DFCV        +YRC+IP
Sbjct: 342 CVCGDFCVPAEYLQAGVYRCIIP 364


>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
           to CREB-binding protein GB:AAC51770 GI:2443859 from
           [Homo sapiens]; contains Pfam PF02135: TAZ zinc finger
           profile; contains Pfam PF00569: Zinc finger, ZZ type
           domain; identical to histone acetyltransferase HAC4
           (GI:14794966) {Arabidopsis thaliana}
          Length = 1456

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 8/32 (25%), Positives = 15/32 (46%)
 Frame = -2

Query: 238 FCVRRPGHSNELYRCLIPSCANNFCIDNTVWL 143
           FC +       +  C +P+C   +C+   +WL
Sbjct: 447 FCFQARKIVKHIDCCKVPNCKYRYCLGTRMWL 478


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,715,524
Number of Sequences: 28952
Number of extensions: 126420
Number of successful extensions: 345
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 380568784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)