Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0873.Seq
         (269 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9W091 Cluster: CG8001-PA; n=3; Sophophora|Rep: CG8001-...    31   6.6  
UniRef50_Q0CGY5 Cluster: Predicted protein; n=1; Aspergillus ter...    31   6.6  
UniRef50_A4E9D2 Cluster: Putative uncharacterized protein; n=1; ...    30   8.8  
UniRef50_A3BK87 Cluster: Putative uncharacterized protein; n=2; ...    30   8.8  
UniRef50_Q4W9H9 Cluster: Ankyrin repeat protein; n=4; Trichocoma...    30   8.8  

>UniRef50_Q9W091 Cluster: CG8001-PA; n=3; Sophophora|Rep: CG8001-PA
           - Drosophila melanogaster (Fruit fly)
          Length = 748

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -1

Query: 203 LLQRKXNSINMIDFTGGRTSCES 135
           LLQR+ N IN ID+ GG TS  S
Sbjct: 279 LLQREHNIINRIDWRGGHTSASS 301


>UniRef50_Q0CGY5 Cluster: Predicted protein; n=1; Aspergillus terreus
            NIH2624|Rep: Predicted protein - Aspergillus terreus
            (strain NIH 2624)
          Length = 1323

 Score = 30.7 bits (66), Expect = 6.6
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 51   TTAAPPFKPKRI-TASRQK*AGGGGTYPRGLTRGPTTSKINH 173
            + A+ PFKP+ + TASR + +   GT   GLT  P  S+  H
Sbjct: 1014 SVASFPFKPRELRTASRSRASSRSGTPGPGLTITPAPSRRRH 1055


>UniRef50_A4E9D2 Cluster: Putative uncharacterized protein; n=1;
           Collinsella aerofaciens ATCC 25986|Rep: Putative
           uncharacterized protein - Collinsella aerofaciens ATCC
           25986
          Length = 156

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +1

Query: 28  INVPPI*LQRLPRPSNRNALLLHGRNRQGAVVPTRAD 138
           ++ P   LQ    P   +A   H RNR+ A +PT AD
Sbjct: 83  VDAPHADLQPRSTPRRHHAQCFHHRNRRSAAIPTLAD 119


>UniRef50_A3BK87 Cluster: Putative uncharacterized protein; n=2;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 910

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +3

Query: 57  AAPPFKPKRITASRQK*AGGGGTYP 131
           A PP +PKR+   R+K AGG G+ P
Sbjct: 82  APPPPQPKRLQGGRKKGAGGHGSCP 106


>UniRef50_Q4W9H9 Cluster: Ankyrin repeat protein; n=4;
           Trichocomaceae|Rep: Ankyrin repeat protein - Aspergillus
           fumigatus (Sartorya fumigata)
          Length = 1763

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 49  LQRLPRPSNRNALLLHGRNRQGAVVPTRADSQ 144
           L++LP+PS+R+A +   R  +G  VP R   Q
Sbjct: 329 LEKLPKPSDRDAYIDKRRRERGRPVPMRISKQ 360


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 267,596,317
Number of Sequences: 1657284
Number of extensions: 4778430
Number of successful extensions: 10895
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10895
length of database: 575,637,011
effective HSP length: 67
effective length of database: 464,598,983
effective search space used: 10221177626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)