Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0873.Seq
         (269 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    25   1.9  
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom...    23   5.7  
SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...    23   7.5  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    23   7.5  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    23   7.5  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    23   9.9  
SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces pombe...    23   9.9  

>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -2

Query: 100 CREA-VMRFGLKGGAAVVTIWVAHLCC 23
           CR A  +R G+K G  ++ I V  +CC
Sbjct: 7   CRSANTLRKGIKNGKLILKIIVNDVCC 33


>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 114 GGGTYPRGLTRGPTTSKINHINTIRFPL 197
           GGG +  G+ RGP   K + ++TI+  L
Sbjct: 92  GGGMFGGGMPRGPRKGK-DLVHTIKVTL 118


>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +1

Query: 64  RPSNRNALLLHGRNRQGAVVPTRADS 141
           RP  +  + +      GAV+P R D+
Sbjct: 164 RPDTKTQVTIEYEEENGAVIPRRVDT 189


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 50  YNGCPALQTETHYCFTA 100
           Y  CP L +   +CF+A
Sbjct: 517 YPACPLLTSRVRFCFSA 533


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 45  YGWHIYVVDVYS 10
           YGW +YV+  YS
Sbjct: 320 YGWRLYVLQEYS 331


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = -2

Query: 124  VPPPPAYFCREAVMRFGLKGGAAVVTIWVAHLCCR 20
            V PPP Y C E    F    G  +V    A+  C+
Sbjct: 1301 VDPPPNYSCGEYFSSFLNSSGHGIVYNPEAYSSCQ 1335


>SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 21  LQHKCATHIVTTA 59
           +QHKC   IVTTA
Sbjct: 111 VQHKCVDVIVTTA 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,013,272
Number of Sequences: 5004
Number of extensions: 16520
Number of successful extensions: 30
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)