Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0873.Seq
(269 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0561 + 19485218-19485242,19485323-19486467,19487354-194874... 30 0.29
08_02_1170 + 24876197-24877070,24877563-24877606,24877805-248779... 27 2.1
02_01_0695 - 5202091-5202498,5204103-5204588 27 2.1
03_01_0491 + 3720842-3720958,3721904-3723109 26 3.6
01_06_1762 - 39716723-39717016,39717256-39717332,39717452-397174... 26 3.6
10_08_0731 + 20161962-20163628,20163721-20163862,20164181-201644... 26 4.7
09_02_0154 + 5055946-5058721,5058754-5058770 26 4.7
08_01_0162 - 1302497-1302787,1304608-1305271,1305380-1306927,130... 26 4.7
07_01_0810 - 6368473-6368955 26 4.7
07_03_1137 - 24220597-24220619,24220694-24221414,24221513-242217... 25 6.3
01_06_1749 - 39636951-39638102 25 6.3
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535... 25 8.3
07_01_0769 + 5908942-5908946,5909085-5909666,5910370-5910429,591... 25 8.3
04_03_0633 + 18208116-18208732,18209916-18210129 25 8.3
04_01_0232 + 2943241-2943604,2944191-2944782,2944993-2945179 25 8.3
01_05_0498 + 22743517-22743894 25 8.3
01_01_0206 - 1770622-1771347 25 8.3
>07_03_0561 +
19485218-19485242,19485323-19486467,19487354-19487476,
19487553-19487626,19487886-19487946,19488285-19488370,
19488795-19488864,19489026-19489122,19489342-19489481,
19490225-19490308,19490313-19490346,19491833-19491951
Length = 685
Score = 29.9 bits (64), Expect = 0.29
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 57 AAPPFKPKRITASRQK*AGGGGTYP 131
A PP +PKR+ R+K AGG G P
Sbjct: 82 APPPPQPKRLQGGRKKGAGGHGKLP 106
>08_02_1170 +
24876197-24877070,24877563-24877606,24877805-24877900,
24877999-24878544
Length = 519
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = -2
Query: 97 REAVMRFGLKGGAAVVTIWVAHLCCRCL*LPV 2
R +++ G+ G A+V++W+ + C + +PV
Sbjct: 140 RPSLLLLGVTGTTALVSMWIHNTACTVMMMPV 171
>02_01_0695 - 5202091-5202498,5204103-5204588
Length = 297
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 66 PFKPKRITASRQK*AGGGGTYP 131
PF P + A++ K AGGGG P
Sbjct: 203 PFYPTKANAAQSKAAGGGGCRP 224
>03_01_0491 + 3720842-3720958,3721904-3723109
Length = 440
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -2
Query: 124 VPPPPAYFCREAVMRFGLKGGAAVVTIW 41
V PPPAY+ + F AAV W
Sbjct: 274 VAPPPAYYTSSIAIPFYPAAAAAVAAYW 301
>01_06_1762 -
39716723-39717016,39717256-39717332,39717452-39717498,
39717953-39718053,39718271-39718360,39718556-39720133
Length = 728
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Frame = +3
Query: 24 QHKCATHIVTTAAPPFKPKRITASRQK*AGGGG--TYPRGLTRGPTTS 161
Q C+ V ++ PF P A+ A GGG +P+ P +S
Sbjct: 319 QQSCSKSSVVVSSQPFSPPTAAAAGDMHASGGGNMAWPQQFAPFPVSS 366
>10_08_0731 +
20161962-20163628,20163721-20163862,20164181-20164490,
20164566-20166466,20166557-20166650,20166953-20167440,
20167919-20168599,20168870-20168944,20170148-20170210,
20170588-20170633,20171373-20171420,20171484-20171557
Length = 1862
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 79 NALLLHGRNRQGAVVPTRADSQEVLPPVKSIILI 180
+ +L N + + D+Q++LPP+KS LI
Sbjct: 662 DCVLTEASNEESSSAAIHCDAQDLLPPLKSEELI 695
>09_02_0154 + 5055946-5058721,5058754-5058770
Length = 930
Score = 25.8 bits (54), Expect = 4.7
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -2
Query: 103 FCREAVMRFGLKGGAAVVTIWVAHLCCRCL*LPV 2
FCR+A R G VV W + +C LP+
Sbjct: 346 FCRKAFHRLDQNGCPQVVMHWAEKIVSKCEGLPL 379
>08_01_0162 - 1302497-1302787,1304608-1305271,1305380-1306927,
1307360-1308768
Length = 1303
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 64 RPSNRNALLLHGRNRQGAVVPTRADSQEVLPPVKSI 171
RPS RNA+ + Q V+P + +PPV S+
Sbjct: 1150 RPSIRNAMAMLQSGGQLPVLPAKMPVPMYIPPVVSV 1185
>07_01_0810 - 6368473-6368955
Length = 160
Score = 25.8 bits (54), Expect = 4.7
Identities = 17/46 (36%), Positives = 18/46 (39%)
Frame = -2
Query: 151 GPLVSPRG*VPPPPAYFCREAVMRFGLKGGAAVVTIWVAHLCCRCL 14
GPL P P P CR V R + G A V CCR L
Sbjct: 39 GPLCQPGMGYPMYPLPRCRALVKRQCVGRGTAAAAEQVRRDCCRQL 84
>07_03_1137 -
24220597-24220619,24220694-24221414,24221513-24221731,
24221805-24222505,24223127-24223376
Length = 637
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 26 T*MCHPYSYNGCPALQTETHYCF 94
T M +P Y GCP LQ E + F
Sbjct: 143 TVMDYPQQYEGCPLLQLEMIHHF 165
>01_06_1749 - 39636951-39638102
Length = 383
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 45 IVTTAAPPFKPKRITA 92
+ + AAPPF P RIT+
Sbjct: 166 VASAAAPPFDPSRITS 181
>11_08_0007 +
27551173-27551828,27552071-27552282,27553371-27553550,
27555154-27556187
Length = 693
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 31 NVPPI*LQRLPRPSNRNALLLHGRNRQGAVVPTRAD 138
+VP + L+ +PR S + L +GR+ +PTR D
Sbjct: 475 DVPMLVLEFIPRGSLYDVLHGNGRHTHDLPLPTRVD 510
>07_01_0769 +
5908942-5908946,5909085-5909666,5910370-5910429,
5910635-5910674,5910767-5910860,5911582-5911952
Length = 383
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 158 GGRTSCESARVGTTAPCLFLP*SSNAFRFEGRGSRCNYMG 39
GGR C S R ++ +S+A GRG R Y+G
Sbjct: 287 GGRGGCRSYRPWWMGAMIYSTDTSDADCGGGRGGRLAYIG 326
>04_03_0633 + 18208116-18208732,18209916-18210129
Length = 276
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 124 VPPPPAYFCREAVMRFGLKGGAAVV 50
VPPPPA +M G +GG A V
Sbjct: 28 VPPPPARNAVALLMWLGRRGGGAGV 52
>04_01_0232 + 2943241-2943604,2944191-2944782,2944993-2945179
Length = 380
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 124 PTRADSQEVLPPVKSII 174
P RAD E++PP K I+
Sbjct: 162 PGRADPAEMMPPTKQIV 178
>01_05_0498 + 22743517-22743894
Length = 125
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +1
Query: 82 ALLLHGRNRQGAVVPTRADSQEVLPPVKSIILILFXFLC 198
AL H N AV +RAD+ V + S + + FLC
Sbjct: 11 ALAFHAVNTGVAVYRSRADAAAVALVLASSLALALLFLC 49
>01_01_0206 - 1770622-1771347
Length = 241
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/30 (36%), Positives = 13/30 (43%)
Frame = +3
Query: 63 PPFKPKRITASRQK*AGGGGTYPRGLTRGP 152
PP PK +Q+ GGG P R P
Sbjct: 81 PPVHPKPSPCKQQQATSGGGVKPTSYQRRP 110
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,941,510
Number of Sequences: 37544
Number of extensions: 161306
Number of successful extensions: 464
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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