BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0873.Seq (269 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 07_03_0561 + 19485218-19485242,19485323-19486467,19487354-194874... 30 0.29 08_02_1170 + 24876197-24877070,24877563-24877606,24877805-248779... 27 2.1 02_01_0695 - 5202091-5202498,5204103-5204588 27 2.1 03_01_0491 + 3720842-3720958,3721904-3723109 26 3.6 01_06_1762 - 39716723-39717016,39717256-39717332,39717452-397174... 26 3.6 10_08_0731 + 20161962-20163628,20163721-20163862,20164181-201644... 26 4.7 09_02_0154 + 5055946-5058721,5058754-5058770 26 4.7 08_01_0162 - 1302497-1302787,1304608-1305271,1305380-1306927,130... 26 4.7 07_01_0810 - 6368473-6368955 26 4.7 07_03_1137 - 24220597-24220619,24220694-24221414,24221513-242217... 25 6.3 01_06_1749 - 39636951-39638102 25 6.3 11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535... 25 8.3 07_01_0769 + 5908942-5908946,5909085-5909666,5910370-5910429,591... 25 8.3 04_03_0633 + 18208116-18208732,18209916-18210129 25 8.3 04_01_0232 + 2943241-2943604,2944191-2944782,2944993-2945179 25 8.3 01_05_0498 + 22743517-22743894 25 8.3 01_01_0206 - 1770622-1771347 25 8.3 >07_03_0561 + 19485218-19485242,19485323-19486467,19487354-19487476, 19487553-19487626,19487886-19487946,19488285-19488370, 19488795-19488864,19489026-19489122,19489342-19489481, 19490225-19490308,19490313-19490346,19491833-19491951 Length = 685 Score = 29.9 bits (64), Expect = 0.29 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = +3 Query: 57 AAPPFKPKRITASRQK*AGGGGTYP 131 A PP +PKR+ R+K AGG G P Sbjct: 82 APPPPQPKRLQGGRKKGAGGHGKLP 106 >08_02_1170 + 24876197-24877070,24877563-24877606,24877805-24877900, 24877999-24878544 Length = 519 Score = 27.1 bits (57), Expect = 2.1 Identities = 9/32 (28%), Positives = 20/32 (62%) Frame = -2 Query: 97 REAVMRFGLKGGAAVVTIWVAHLCCRCL*LPV 2 R +++ G+ G A+V++W+ + C + +PV Sbjct: 140 RPSLLLLGVTGTTALVSMWIHNTACTVMMMPV 171 >02_01_0695 - 5202091-5202498,5204103-5204588 Length = 297 Score = 27.1 bits (57), Expect = 2.1 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +3 Query: 66 PFKPKRITASRQK*AGGGGTYP 131 PF P + A++ K AGGGG P Sbjct: 203 PFYPTKANAAQSKAAGGGGCRP 224 >03_01_0491 + 3720842-3720958,3721904-3723109 Length = 440 Score = 26.2 bits (55), Expect = 3.6 Identities = 11/28 (39%), Positives = 13/28 (46%) Frame = -2 Query: 124 VPPPPAYFCREAVMRFGLKGGAAVVTIW 41 V PPPAY+ + F AAV W Sbjct: 274 VAPPPAYYTSSIAIPFYPAAAAAVAAYW 301 >01_06_1762 - 39716723-39717016,39717256-39717332,39717452-39717498, 39717953-39718053,39718271-39718360,39718556-39720133 Length = 728 Score = 26.2 bits (55), Expect = 3.6 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%) Frame = +3 Query: 24 QHKCATHIVTTAAPPFKPKRITASRQK*AGGGG--TYPRGLTRGPTTS 161 Q C+ V ++ PF P A+ A GGG +P+ P +S Sbjct: 319 QQSCSKSSVVVSSQPFSPPTAAAAGDMHASGGGNMAWPQQFAPFPVSS 366 >10_08_0731 + 20161962-20163628,20163721-20163862,20164181-20164490, 20164566-20166466,20166557-20166650,20166953-20167440, 20167919-20168599,20168870-20168944,20170148-20170210, 20170588-20170633,20171373-20171420,20171484-20171557 Length = 1862 Score = 25.8 bits (54), Expect = 4.7 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = +1 Query: 79 NALLLHGRNRQGAVVPTRADSQEVLPPVKSIILI 180 + +L N + + D+Q++LPP+KS LI Sbjct: 662 DCVLTEASNEESSSAAIHCDAQDLLPPLKSEELI 695 >09_02_0154 + 5055946-5058721,5058754-5058770 Length = 930 Score = 25.8 bits (54), Expect = 4.7 Identities = 12/34 (35%), Positives = 16/34 (47%) Frame = -2 Query: 103 FCREAVMRFGLKGGAAVVTIWVAHLCCRCL*LPV 2 FCR+A R G VV W + +C LP+ Sbjct: 346 FCRKAFHRLDQNGCPQVVMHWAEKIVSKCEGLPL 379 >08_01_0162 - 1302497-1302787,1304608-1305271,1305380-1306927, 1307360-1308768 Length = 1303 Score = 25.8 bits (54), Expect = 4.7 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +1 Query: 64 RPSNRNALLLHGRNRQGAVVPTRADSQEVLPPVKSI 171 RPS RNA+ + Q V+P + +PPV S+ Sbjct: 1150 RPSIRNAMAMLQSGGQLPVLPAKMPVPMYIPPVVSV 1185 >07_01_0810 - 6368473-6368955 Length = 160 Score = 25.8 bits (54), Expect = 4.7 Identities = 17/46 (36%), Positives = 18/46 (39%) Frame = -2 Query: 151 GPLVSPRG*VPPPPAYFCREAVMRFGLKGGAAVVTIWVAHLCCRCL 14 GPL P P P CR V R + G A V CCR L Sbjct: 39 GPLCQPGMGYPMYPLPRCRALVKRQCVGRGTAAAAEQVRRDCCRQL 84 >07_03_1137 - 24220597-24220619,24220694-24221414,24221513-24221731, 24221805-24222505,24223127-24223376 Length = 637 Score = 25.4 bits (53), Expect = 6.3 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = +2 Query: 26 T*MCHPYSYNGCPALQTETHYCF 94 T M +P Y GCP LQ E + F Sbjct: 143 TVMDYPQQYEGCPLLQLEMIHHF 165 >01_06_1749 - 39636951-39638102 Length = 383 Score = 25.4 bits (53), Expect = 6.3 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +3 Query: 45 IVTTAAPPFKPKRITA 92 + + AAPPF P RIT+ Sbjct: 166 VASAAAPPFDPSRITS 181 >11_08_0007 + 27551173-27551828,27552071-27552282,27553371-27553550, 27555154-27556187 Length = 693 Score = 25.0 bits (52), Expect = 8.3 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = +1 Query: 31 NVPPI*LQRLPRPSNRNALLLHGRNRQGAVVPTRAD 138 +VP + L+ +PR S + L +GR+ +PTR D Sbjct: 475 DVPMLVLEFIPRGSLYDVLHGNGRHTHDLPLPTRVD 510 >07_01_0769 + 5908942-5908946,5909085-5909666,5910370-5910429, 5910635-5910674,5910767-5910860,5911582-5911952 Length = 383 Score = 25.0 bits (52), Expect = 8.3 Identities = 14/40 (35%), Positives = 19/40 (47%) Frame = -1 Query: 158 GGRTSCESARVGTTAPCLFLP*SSNAFRFEGRGSRCNYMG 39 GGR C S R ++ +S+A GRG R Y+G Sbjct: 287 GGRGGCRSYRPWWMGAMIYSTDTSDADCGGGRGGRLAYIG 326 >04_03_0633 + 18208116-18208732,18209916-18210129 Length = 276 Score = 25.0 bits (52), Expect = 8.3 Identities = 12/25 (48%), Positives = 14/25 (56%) Frame = -2 Query: 124 VPPPPAYFCREAVMRFGLKGGAAVV 50 VPPPPA +M G +GG A V Sbjct: 28 VPPPPARNAVALLMWLGRRGGGAGV 52 >04_01_0232 + 2943241-2943604,2944191-2944782,2944993-2945179 Length = 380 Score = 25.0 bits (52), Expect = 8.3 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +1 Query: 124 PTRADSQEVLPPVKSII 174 P RAD E++PP K I+ Sbjct: 162 PGRADPAEMMPPTKQIV 178 >01_05_0498 + 22743517-22743894 Length = 125 Score = 25.0 bits (52), Expect = 8.3 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = +1 Query: 82 ALLLHGRNRQGAVVPTRADSQEVLPPVKSIILILFXFLC 198 AL H N AV +RAD+ V + S + + FLC Sbjct: 11 ALAFHAVNTGVAVYRSRADAAAVALVLASSLALALLFLC 49 >01_01_0206 - 1770622-1771347 Length = 241 Score = 25.0 bits (52), Expect = 8.3 Identities = 11/30 (36%), Positives = 13/30 (43%) Frame = +3 Query: 63 PPFKPKRITASRQK*AGGGGTYPRGLTRGP 152 PP PK +Q+ GGG P R P Sbjct: 81 PPVHPKPSPCKQQQATSGGGVKPTSYQRRP 110 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,941,510 Number of Sequences: 37544 Number of extensions: 161306 Number of successful extensions: 464 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 453 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 464 length of database: 14,793,348 effective HSP length: 68 effective length of database: 12,240,356 effective search space used: 257047476 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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