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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0873.Seq
         (269 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0561 + 19485218-19485242,19485323-19486467,19487354-194874...    30   0.29 
08_02_1170 + 24876197-24877070,24877563-24877606,24877805-248779...    27   2.1  
02_01_0695 - 5202091-5202498,5204103-5204588                           27   2.1  
03_01_0491 + 3720842-3720958,3721904-3723109                           26   3.6  
01_06_1762 - 39716723-39717016,39717256-39717332,39717452-397174...    26   3.6  
10_08_0731 + 20161962-20163628,20163721-20163862,20164181-201644...    26   4.7  
09_02_0154 + 5055946-5058721,5058754-5058770                           26   4.7  
08_01_0162 - 1302497-1302787,1304608-1305271,1305380-1306927,130...    26   4.7  
07_01_0810 - 6368473-6368955                                           26   4.7  
07_03_1137 - 24220597-24220619,24220694-24221414,24221513-242217...    25   6.3  
01_06_1749 - 39636951-39638102                                         25   6.3  
11_08_0007 + 27551173-27551828,27552071-27552282,27553371-275535...    25   8.3  
07_01_0769 + 5908942-5908946,5909085-5909666,5910370-5910429,591...    25   8.3  
04_03_0633 + 18208116-18208732,18209916-18210129                       25   8.3  
04_01_0232 + 2943241-2943604,2944191-2944782,2944993-2945179           25   8.3  
01_05_0498 + 22743517-22743894                                         25   8.3  
01_01_0206 - 1770622-1771347                                           25   8.3  

>07_03_0561 +
           19485218-19485242,19485323-19486467,19487354-19487476,
           19487553-19487626,19487886-19487946,19488285-19488370,
           19488795-19488864,19489026-19489122,19489342-19489481,
           19490225-19490308,19490313-19490346,19491833-19491951
          Length = 685

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 57  AAPPFKPKRITASRQK*AGGGGTYP 131
           A PP +PKR+   R+K AGG G  P
Sbjct: 82  APPPPQPKRLQGGRKKGAGGHGKLP 106


>08_02_1170 +
           24876197-24877070,24877563-24877606,24877805-24877900,
           24877999-24878544
          Length = 519

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -2

Query: 97  REAVMRFGLKGGAAVVTIWVAHLCCRCL*LPV 2
           R +++  G+ G  A+V++W+ +  C  + +PV
Sbjct: 140 RPSLLLLGVTGTTALVSMWIHNTACTVMMMPV 171


>02_01_0695 - 5202091-5202498,5204103-5204588
          Length = 297

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 66  PFKPKRITASRQK*AGGGGTYP 131
           PF P +  A++ K AGGGG  P
Sbjct: 203 PFYPTKANAAQSKAAGGGGCRP 224


>03_01_0491 + 3720842-3720958,3721904-3723109
          Length = 440

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -2

Query: 124 VPPPPAYFCREAVMRFGLKGGAAVVTIW 41
           V PPPAY+     + F     AAV   W
Sbjct: 274 VAPPPAYYTSSIAIPFYPAAAAAVAAYW 301


>01_06_1762 -
           39716723-39717016,39717256-39717332,39717452-39717498,
           39717953-39718053,39718271-39718360,39718556-39720133
          Length = 728

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
 Frame = +3

Query: 24  QHKCATHIVTTAAPPFKPKRITASRQK*AGGGG--TYPRGLTRGPTTS 161
           Q  C+   V  ++ PF P    A+    A GGG   +P+     P +S
Sbjct: 319 QQSCSKSSVVVSSQPFSPPTAAAAGDMHASGGGNMAWPQQFAPFPVSS 366


>10_08_0731 +
           20161962-20163628,20163721-20163862,20164181-20164490,
           20164566-20166466,20166557-20166650,20166953-20167440,
           20167919-20168599,20168870-20168944,20170148-20170210,
           20170588-20170633,20171373-20171420,20171484-20171557
          Length = 1862

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 79  NALLLHGRNRQGAVVPTRADSQEVLPPVKSIILI 180
           + +L    N + +      D+Q++LPP+KS  LI
Sbjct: 662 DCVLTEASNEESSSAAIHCDAQDLLPPLKSEELI 695


>09_02_0154 + 5055946-5058721,5058754-5058770
          Length = 930

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -2

Query: 103 FCREAVMRFGLKGGAAVVTIWVAHLCCRCL*LPV 2
           FCR+A  R    G   VV  W   +  +C  LP+
Sbjct: 346 FCRKAFHRLDQNGCPQVVMHWAEKIVSKCEGLPL 379


>08_01_0162 - 1302497-1302787,1304608-1305271,1305380-1306927,
            1307360-1308768
          Length = 1303

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 64   RPSNRNALLLHGRNRQGAVVPTRADSQEVLPPVKSI 171
            RPS RNA+ +     Q  V+P +      +PPV S+
Sbjct: 1150 RPSIRNAMAMLQSGGQLPVLPAKMPVPMYIPPVVSV 1185


>07_01_0810 - 6368473-6368955
          Length = 160

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 17/46 (36%), Positives = 18/46 (39%)
 Frame = -2

Query: 151 GPLVSPRG*VPPPPAYFCREAVMRFGLKGGAAVVTIWVAHLCCRCL 14
           GPL  P    P  P   CR  V R  +  G A     V   CCR L
Sbjct: 39  GPLCQPGMGYPMYPLPRCRALVKRQCVGRGTAAAAEQVRRDCCRQL 84


>07_03_1137 -
           24220597-24220619,24220694-24221414,24221513-24221731,
           24221805-24222505,24223127-24223376
          Length = 637

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 26  T*MCHPYSYNGCPALQTETHYCF 94
           T M +P  Y GCP LQ E  + F
Sbjct: 143 TVMDYPQQYEGCPLLQLEMIHHF 165


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 45  IVTTAAPPFKPKRITA 92
           + + AAPPF P RIT+
Sbjct: 166 VASAAAPPFDPSRITS 181


>11_08_0007 +
           27551173-27551828,27552071-27552282,27553371-27553550,
           27555154-27556187
          Length = 693

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +1

Query: 31  NVPPI*LQRLPRPSNRNALLLHGRNRQGAVVPTRAD 138
           +VP + L+ +PR S  + L  +GR+     +PTR D
Sbjct: 475 DVPMLVLEFIPRGSLYDVLHGNGRHTHDLPLPTRVD 510


>07_01_0769 +
           5908942-5908946,5909085-5909666,5910370-5910429,
           5910635-5910674,5910767-5910860,5911582-5911952
          Length = 383

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -1

Query: 158 GGRTSCESARVGTTAPCLFLP*SSNAFRFEGRGSRCNYMG 39
           GGR  C S R       ++   +S+A    GRG R  Y+G
Sbjct: 287 GGRGGCRSYRPWWMGAMIYSTDTSDADCGGGRGGRLAYIG 326


>04_03_0633 + 18208116-18208732,18209916-18210129
          Length = 276

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 124 VPPPPAYFCREAVMRFGLKGGAAVV 50
           VPPPPA      +M  G +GG A V
Sbjct: 28  VPPPPARNAVALLMWLGRRGGGAGV 52


>04_01_0232 + 2943241-2943604,2944191-2944782,2944993-2945179
          Length = 380

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 124 PTRADSQEVLPPVKSII 174
           P RAD  E++PP K I+
Sbjct: 162 PGRADPAEMMPPTKQIV 178


>01_05_0498 + 22743517-22743894
          Length = 125

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +1

Query: 82  ALLLHGRNRQGAVVPTRADSQEVLPPVKSIILILFXFLC 198
           AL  H  N   AV  +RAD+  V   + S + +   FLC
Sbjct: 11  ALAFHAVNTGVAVYRSRADAAAVALVLASSLALALLFLC 49


>01_01_0206 - 1770622-1771347
          Length = 241

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 63  PPFKPKRITASRQK*AGGGGTYPRGLTRGP 152
           PP  PK     +Q+   GGG  P    R P
Sbjct: 81  PPVHPKPSPCKQQQATSGGGVKPTSYQRRP 110


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,941,510
Number of Sequences: 37544
Number of extensions: 161306
Number of successful extensions: 464
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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