BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0873.Seq (269 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_39636| Best HMM Match : WSC (HMM E-Value=0.34) 29 0.78 SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12) 27 1.8 SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.4 SB_19246| Best HMM Match : CPL (HMM E-Value=5.99994e-41) 27 3.1 SB_19561| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.5 SB_9978| Best HMM Match : Pkinase (HMM E-Value=3.4e-17) 26 5.5 SB_15762| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.2 SB_28840| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.5 SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 25 9.5 >SB_39636| Best HMM Match : WSC (HMM E-Value=0.34) Length = 390 Score = 28.7 bits (61), Expect = 0.78 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = -1 Query: 143 CESARVGTTAPCLFLP*SSNAFRFEGRGSRCNYMGGTFML 24 C+S TT+ C++L NA RC +GGTF L Sbjct: 207 CKSGWHSTTSRCIYL--MPNATYPGSTAERCRLLGGTFFL 244 >SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12) Length = 872 Score = 27.5 bits (58), Expect = 1.8 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +1 Query: 49 LQRLPRPSNRNALLLHGRNRQGA 117 +QR P P+ RN++ LHG Q A Sbjct: 30 VQRRPEPTPRNSIFLHGLRAQTA 52 >SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1122 Score = 27.1 bits (57), Expect = 2.4 Identities = 11/41 (26%), Positives = 22/41 (53%) Frame = +1 Query: 28 INVPPI*LQRLPRPSNRNALLLHGRNRQGAVVPTRADSQEV 150 ++VPP L R RP N L + G + + +P + ++++ Sbjct: 299 LSVPPEQLSRNERPKNTTTLFVSGVDTMASKLPVQRSARDI 339 >SB_19246| Best HMM Match : CPL (HMM E-Value=5.99994e-41) Length = 506 Score = 26.6 bits (56), Expect = 3.1 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%) Frame = +3 Query: 42 HIVTTAAPPFKPKR-ITASRQK*-AGGGGTYPRGLTRG 149 H+V +A+ F KR I + K AG GTYP+G+ G Sbjct: 377 HLVKSASGHFALKRLILQDKDKLEAGKDGTYPKGVLEG 414 >SB_19561| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 410 Score = 25.8 bits (54), Expect = 5.5 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%) Frame = +2 Query: 41 PYSYNGCPALQTETHY---CFTAEIGR 112 PYS GC ++ T T Y ++AE+G+ Sbjct: 374 PYSKTGCKSIDTPTIYKNKIYSAEVGK 400 >SB_9978| Best HMM Match : Pkinase (HMM E-Value=3.4e-17) Length = 348 Score = 25.8 bits (54), Expect = 5.5 Identities = 10/26 (38%), Positives = 12/26 (46%) Frame = +2 Query: 38 HPYSYNGCPALQTETHYCFTAEIGRG 115 HP+ N QT+ H CF E G Sbjct: 232 HPFLVNLFACFQTQEHVCFVMEYAPG 257 >SB_15762| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 280 Score = 25.4 bits (53), Expect = 7.2 Identities = 13/40 (32%), Positives = 18/40 (45%) Frame = +1 Query: 22 YNINVPPI*LQRLPRPSNRNALLLHGRNRQGAVVPTRADS 141 YN N PP + + R RNA + R G + + DS Sbjct: 25 YNPNAPPKTIVKFVRRDTRNAFYSNRRKLAGMKIHVKDDS 64 >SB_28840| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 615 Score = 25.0 bits (52), Expect = 9.5 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +3 Query: 69 FKPKRITASRQK*AGGGGTYPRGLTRGPT 155 FK + + A + GGGG+YP L R P+ Sbjct: 529 FKTRAVEAVFYR-VGGGGSYPTPLNRVPS 556 >SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0) Length = 7381 Score = 25.0 bits (52), Expect = 9.5 Identities = 8/20 (40%), Positives = 13/20 (65%) Frame = +2 Query: 38 HPYSYNGCPALQTETHYCFT 97 HP+S+ PA++ E + C T Sbjct: 1889 HPWSWRSAPAVRLELYGCLT 1908 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,420,492 Number of Sequences: 59808 Number of extensions: 146133 Number of successful extensions: 334 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 311 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 334 length of database: 16,821,457 effective HSP length: 66 effective length of database: 12,874,129 effective search space used: 296104967 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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