Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0873.Seq
         (269 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39636| Best HMM Match : WSC (HMM E-Value=0.34)                      29   0.78 
SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)               27   1.8  
SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.4  
SB_19246| Best HMM Match : CPL (HMM E-Value=5.99994e-41)               27   3.1  
SB_19561| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.5  
SB_9978| Best HMM Match : Pkinase (HMM E-Value=3.4e-17)                26   5.5  
SB_15762| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.2  
SB_28840| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                25   9.5  

>SB_39636| Best HMM Match : WSC (HMM E-Value=0.34)
          Length = 390

 Score = 28.7 bits (61), Expect = 0.78
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 143 CESARVGTTAPCLFLP*SSNAFRFEGRGSRCNYMGGTFML 24
           C+S    TT+ C++L    NA        RC  +GGTF L
Sbjct: 207 CKSGWHSTTSRCIYL--MPNATYPGSTAERCRLLGGTFFL 244


>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
          Length = 872

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 49  LQRLPRPSNRNALLLHGRNRQGA 117
           +QR P P+ RN++ LHG   Q A
Sbjct: 30  VQRRPEPTPRNSIFLHGLRAQTA 52


>SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 28  INVPPI*LQRLPRPSNRNALLLHGRNRQGAVVPTRADSQEV 150
           ++VPP  L R  RP N   L + G +   + +P +  ++++
Sbjct: 299 LSVPPEQLSRNERPKNTTTLFVSGVDTMASKLPVQRSARDI 339


>SB_19246| Best HMM Match : CPL (HMM E-Value=5.99994e-41)
          Length = 506

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 42  HIVTTAAPPFKPKR-ITASRQK*-AGGGGTYPRGLTRG 149
           H+V +A+  F  KR I   + K  AG  GTYP+G+  G
Sbjct: 377 HLVKSASGHFALKRLILQDKDKLEAGKDGTYPKGVLEG 414


>SB_19561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 410

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
 Frame = +2

Query: 41  PYSYNGCPALQTETHY---CFTAEIGR 112
           PYS  GC ++ T T Y    ++AE+G+
Sbjct: 374 PYSKTGCKSIDTPTIYKNKIYSAEVGK 400


>SB_9978| Best HMM Match : Pkinase (HMM E-Value=3.4e-17)
          Length = 348

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +2

Query: 38  HPYSYNGCPALQTETHYCFTAEIGRG 115
           HP+  N     QT+ H CF  E   G
Sbjct: 232 HPFLVNLFACFQTQEHVCFVMEYAPG 257


>SB_15762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 22  YNINVPPI*LQRLPRPSNRNALLLHGRNRQGAVVPTRADS 141
           YN N PP  + +  R   RNA   + R   G  +  + DS
Sbjct: 25  YNPNAPPKTIVKFVRRDTRNAFYSNRRKLAGMKIHVKDDS 64


>SB_28840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 615

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 69  FKPKRITASRQK*AGGGGTYPRGLTRGPT 155
           FK + + A   +  GGGG+YP  L R P+
Sbjct: 529 FKTRAVEAVFYR-VGGGGSYPTPLNRVPS 556


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 38   HPYSYNGCPALQTETHYCFT 97
            HP+S+   PA++ E + C T
Sbjct: 1889 HPWSWRSAPAVRLELYGCLT 1908


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,420,492
Number of Sequences: 59808
Number of extensions: 146133
Number of successful extensions: 334
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 16,821,457
effective HSP length: 66
effective length of database: 12,874,129
effective search space used: 296104967
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)