Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0873.Seq
         (269 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    25   0.37 
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   2.6  
CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          22   4.6  
DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific do...    21   6.1  
DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific doub...    21   6.1  
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    21   8.0  

>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1222

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +1

Query: 49   LQRLPRPSNRNALLL---HGRNRQGAVVPTRADS 141
            LQRL R   R   L    HGRNR+    P+ AD+
Sbjct: 1143 LQRLYRQRAREGTLPTVPHGRNRRSRSAPSEADT 1176


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
 Frame = +3

Query: 42  HIVTTAAPPFKPKR----ITASRQK*AGGGGTYPRGLTRGPTTS 161
           H+  TA   + P+R    I   R   A GGG+Y      G T S
Sbjct: 160 HLENTAFNAYDPERYGGRIICERTLNASGGGSYKLKNEHGQTVS 203


>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 267 RXRSRXSCPDDTRPRHHXP 211
           R R+R + P  TRP  H P
Sbjct: 507 RPRARRNPPATTRPVRHRP 525


>DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific
           doublesex protein protein.
          Length = 265

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -2

Query: 118 PPPAYFCREAVMRFGLKGGAAVVTIWVAHLCCRC 17
           PP    CR   ++ GLKG          H C +C
Sbjct: 38  PPNCARCRNHGLKIGLKGHKRYCKYRTCH-CEKC 70


>DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 622

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 11/34 (32%), Positives = 14/34 (41%)
 Frame = -2

Query: 118 PPPAYFCREAVMRFGLKGGAAVVTIWVAHLCCRC 17
           PP    CR   ++ GLKG          H C +C
Sbjct: 38  PPNCARCRNHGLKIGLKGHKRYCKYRTCH-CEKC 70


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 129 PRGLTRGPTTSKINHINTIRFPL 197
           P+G   GPT   + + + +R PL
Sbjct: 622 PQGSVLGPTLWNVMYDDLLRLPL 644


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 280,344
Number of Sequences: 2352
Number of extensions: 5235
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 54
effective length of database: 436,971
effective search space used: 15293985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)