Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0873.Seq
         (269 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z75545-3|CAA99886.1|  922|Caenorhabditis elegans Hypothetical pr...    25   7.3  
U43316-1|AAC46993.1|  525|Caenorhabditis elegans transmembrane r...    25   7.3  
AC006736-2|AAF60493.1|  529|Caenorhabditis elegans Abnormal cell...    25   7.3  
AC006736-1|AAF60492.1|  525|Caenorhabditis elegans Abnormal cell...    25   7.3  
U41017-5|AAC48216.2|  495|Caenorhabditis elegans C.elegans homeo...    25   9.7  
AJ427855-1|CAD20808.1|  495|Caenorhabditis elegans CEH-21 protei...    25   9.7  
AF014939-8|AAB63930.2|  166|Caenorhabditis elegans Hypothetical ...    25   9.7  

>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
            W01F3.3 protein.
          Length = 2175

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/34 (29%), Positives = 14/34 (41%)
 Frame = +2

Query: 35   CHPYSYNGCPALQTETHYCFTAEIGRGRWYLPAR 136
            CHP+ Y GC   +         E+   R+  P R
Sbjct: 1108 CHPFKYGGCAGNRNHFFTQKECEVHCARFLKPVR 1141


>Z75545-3|CAA99886.1|  922|Caenorhabditis elegans Hypothetical
           protein K10D3.4 protein.
          Length = 922

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 20  STT*MCHPYSYNGC 61
           STT  C  YS+NGC
Sbjct: 540 STTRTCQTYSFNGC 553


>U43316-1|AAC46993.1|  525|Caenorhabditis elegans transmembrane
           receptor protein.
          Length = 525

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 55  RLPRPSNRNALLLHGRNRQGAVVPTRA 135
           + P  +NR  + + G N QGA+   RA
Sbjct: 128 KFPLENNREKMCMKGPNEQGAIQDERA 154


>AC006736-2|AAF60493.1|  529|Caenorhabditis elegans Abnormal cell
           migration protein1, isoform b protein.
          Length = 529

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 55  RLPRPSNRNALLLHGRNRQGAVVPTRA 135
           + P  +NR  + + G N QGA+   RA
Sbjct: 128 KFPLENNREKMCMKGPNEQGAIQDERA 154


>AC006736-1|AAF60492.1|  525|Caenorhabditis elegans Abnormal cell
           migration protein1, isoform a protein.
          Length = 525

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 55  RLPRPSNRNALLLHGRNRQGAVVPTRA 135
           + P  +NR  + + G N QGA+   RA
Sbjct: 128 KFPLENNREKMCMKGPNEQGAIQDERA 154


>U41017-5|AAC48216.2|  495|Caenorhabditis elegans C.elegans homeobox
           protein 21 protein.
          Length = 495

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 82  ALLLHGRNRQGAVVPTRADSQEVLPPVKSIIL 177
           ALLL+G N    VVP   +  E+   ++S++L
Sbjct: 54  ALLLYGHNYPQQVVPPERNYAELDAQLESVVL 85


>AJ427855-1|CAD20808.1|  495|Caenorhabditis elegans CEH-21 protein
           protein.
          Length = 495

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 82  ALLLHGRNRQGAVVPTRADSQEVLPPVKSIIL 177
           ALLL+G N    VVP   +  E+   ++S++L
Sbjct: 54  ALLLYGHNYPQQVVPPERNYAELDAQLESVVL 85


>AF014939-8|AAB63930.2|  166|Caenorhabditis elegans Hypothetical
           protein ZC132.8 protein.
          Length = 166

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 32  MCHPYSYNGCPALQTETHYCFTAEI 106
           MC  Y      A+ TE  YC TAE+
Sbjct: 137 MCFDYVLVPIVAMMTEIKYCPTAEV 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,974,261
Number of Sequences: 27780
Number of extensions: 106933
Number of successful extensions: 239
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 12,740,198
effective HSP length: 68
effective length of database: 10,851,158
effective search space used: 227874318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)