BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0873.Seq (269 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 25 7.3 Z75545-3|CAA99886.1| 922|Caenorhabditis elegans Hypothetical pr... 25 7.3 U43316-1|AAC46993.1| 525|Caenorhabditis elegans transmembrane r... 25 7.3 AC006736-2|AAF60493.1| 529|Caenorhabditis elegans Abnormal cell... 25 7.3 AC006736-1|AAF60492.1| 525|Caenorhabditis elegans Abnormal cell... 25 7.3 U41017-5|AAC48216.2| 495|Caenorhabditis elegans C.elegans homeo... 25 9.7 AJ427855-1|CAD20808.1| 495|Caenorhabditis elegans CEH-21 protei... 25 9.7 AF014939-8|AAB63930.2| 166|Caenorhabditis elegans Hypothetical ... 25 9.7 >Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein W01F3.3 protein. Length = 2175 Score = 25.0 bits (52), Expect = 7.3 Identities = 10/34 (29%), Positives = 14/34 (41%) Frame = +2 Query: 35 CHPYSYNGCPALQTETHYCFTAEIGRGRWYLPAR 136 CHP+ Y GC + E+ R+ P R Sbjct: 1108 CHPFKYGGCAGNRNHFFTQKECEVHCARFLKPVR 1141 >Z75545-3|CAA99886.1| 922|Caenorhabditis elegans Hypothetical protein K10D3.4 protein. Length = 922 Score = 25.0 bits (52), Expect = 7.3 Identities = 9/14 (64%), Positives = 10/14 (71%) Frame = +2 Query: 20 STT*MCHPYSYNGC 61 STT C YS+NGC Sbjct: 540 STTRTCQTYSFNGC 553 >U43316-1|AAC46993.1| 525|Caenorhabditis elegans transmembrane receptor protein. Length = 525 Score = 25.0 bits (52), Expect = 7.3 Identities = 10/27 (37%), Positives = 15/27 (55%) Frame = +1 Query: 55 RLPRPSNRNALLLHGRNRQGAVVPTRA 135 + P +NR + + G N QGA+ RA Sbjct: 128 KFPLENNREKMCMKGPNEQGAIQDERA 154 >AC006736-2|AAF60493.1| 529|Caenorhabditis elegans Abnormal cell migration protein1, isoform b protein. Length = 529 Score = 25.0 bits (52), Expect = 7.3 Identities = 10/27 (37%), Positives = 15/27 (55%) Frame = +1 Query: 55 RLPRPSNRNALLLHGRNRQGAVVPTRA 135 + P +NR + + G N QGA+ RA Sbjct: 128 KFPLENNREKMCMKGPNEQGAIQDERA 154 >AC006736-1|AAF60492.1| 525|Caenorhabditis elegans Abnormal cell migration protein1, isoform a protein. Length = 525 Score = 25.0 bits (52), Expect = 7.3 Identities = 10/27 (37%), Positives = 15/27 (55%) Frame = +1 Query: 55 RLPRPSNRNALLLHGRNRQGAVVPTRA 135 + P +NR + + G N QGA+ RA Sbjct: 128 KFPLENNREKMCMKGPNEQGAIQDERA 154 >U41017-5|AAC48216.2| 495|Caenorhabditis elegans C.elegans homeobox protein 21 protein. Length = 495 Score = 24.6 bits (51), Expect = 9.7 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +1 Query: 82 ALLLHGRNRQGAVVPTRADSQEVLPPVKSIIL 177 ALLL+G N VVP + E+ ++S++L Sbjct: 54 ALLLYGHNYPQQVVPPERNYAELDAQLESVVL 85 >AJ427855-1|CAD20808.1| 495|Caenorhabditis elegans CEH-21 protein protein. Length = 495 Score = 24.6 bits (51), Expect = 9.7 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +1 Query: 82 ALLLHGRNRQGAVVPTRADSQEVLPPVKSIIL 177 ALLL+G N VVP + E+ ++S++L Sbjct: 54 ALLLYGHNYPQQVVPPERNYAELDAQLESVVL 85 >AF014939-8|AAB63930.2| 166|Caenorhabditis elegans Hypothetical protein ZC132.8 protein. Length = 166 Score = 24.6 bits (51), Expect = 9.7 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = +2 Query: 32 MCHPYSYNGCPALQTETHYCFTAEI 106 MC Y A+ TE YC TAE+ Sbjct: 137 MCFDYVLVPIVAMMTEIKYCPTAEV 161 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,974,261 Number of Sequences: 27780 Number of extensions: 106933 Number of successful extensions: 239 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 237 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 239 length of database: 12,740,198 effective HSP length: 68 effective length of database: 10,851,158 effective search space used: 227874318 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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