Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0873.Seq
         (269 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   2.0  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   2.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   3.6  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    20   4.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   6.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    19   8.2  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    19   8.2  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    19   8.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   8.2  

>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 2.0
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -2

Query: 130 G*VPPP-PAYFCREAVMRFGLKGGAAVVTIWVAHLCCR 20
           G VP P P+Y CR     +    G+ +  +  + +CC+
Sbjct: 42  GCVPKPIPSYACRGRCSSYLQVSGSKIWQMERSCMCCQ 79


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 2.7
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +2

Query: 107 GRGRWYLPA 133
           G G+WYLP+
Sbjct: 236 GDGKWYLPS 244


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.6 bits (41), Expect = 3.6
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -1

Query: 248 PALTTRGHDTTXRLVLLQRKXN-SINMIDFTGGRTSCESA 132
           P +T  GH    +  LL    N SI   +F GG T C  A
Sbjct: 146 PIVTIMGHVDHGKTTLLDALRNTSIAKSEF-GGITQCIGA 184


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.2 bits (40), Expect = 4.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 45  YGWHIYVVDVY 13
           Y WH +V DV+
Sbjct: 402 YRWHAFVDDVF 412


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 6.2
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +3

Query: 27   HKCATHIVTTAAPPFKPK 80
            H   TH +   APP  P+
Sbjct: 1354 HDTVTHQLIVHAPPHSPQ 1371


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 19.4 bits (38), Expect = 8.2
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 70  SNRNALLLHGRNRQGAVVP 126
           +  NA+LL GR+++    P
Sbjct: 366 TKENAMLLSGRSQKSTTGP 384


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 19.4 bits (38), Expect = 8.2
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 58  LPRPSNRNALLLHGRNRQGAVVPTRADS 141
           LPRP + N       +R+G  +  ++D+
Sbjct: 630 LPRPKSENNFASQELSREGRRIFHKSDT 657


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 19.4 bits (38), Expect = 8.2
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = +1

Query: 58  LPRPSNRNALLLHGRNRQGAVVPTRADS 141
           LPRP + N       +R+G  +  ++D+
Sbjct: 598 LPRPKSENNFASQELSREGRRIFHKSDT 625


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.4 bits (38), Expect = 8.2
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +1

Query: 100 RNRQGAVVPTRADSQEVLPPV 162
           RN+QG       D   ++PP+
Sbjct: 592 RNKQGHSARRSGDVAVIVPPI 612


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,154
Number of Sequences: 438
Number of extensions: 1382
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5138079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)