Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0873.Seq
(269 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g01560.1 68416.m00086 proline-rich family protein contains pr... 29 0.56
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ... 27 2.2
At4g22165.1 68417.m03204 F-box family protein contains F-box dom... 26 3.0
At3g17740.1 68416.m02264 expressed protein 26 3.0
At2g43800.1 68415.m05445 formin homology 2 domain-containing pro... 26 3.0
At3g24715.1 68416.m03103 octicosapeptide/Phox/Bem1p (PB1) domain... 26 3.9
At5g04260.1 68418.m00417 thioredoxin family protein low similari... 25 5.2
At2g25050.1 68415.m02996 formin homology 2 domain-containing pro... 25 5.2
At1g78955.1 68414.m09205 beta-amyrin synthase, putative similar ... 25 6.8
At5g10940.1 68418.m01269 transducin family protein / WD-40 repea... 25 9.0
At4g21210.1 68417.m03066 expressed protein contains Pfam domain ... 25 9.0
At3g58050.1 68416.m06471 expressed protein 25 9.0
At1g58190.1 68414.m06605 leucine-rich repeat family protein cont... 25 9.0
>At3g01560.1 68416.m00086 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 511
Score = 28.7 bits (61), Expect = 0.56
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 108 AGGGGTYPRGLTRGPTTSKINHINTIRFP 194
+GGG + PR +R P I+ + T+ FP
Sbjct: 441 SGGGSSSPRSESRAPIDDVIDRVTTMGFP 469
>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
family protein low similarity to Translation initiation
factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
aphidicola} SP|P46243, {Salmonella typhimurium}
SP|P33321; contains Pfam profiles PF05198: Translation
initiation factor IF-3 N-terminal domain, PF00707:
Translation initiation factor IF-3 C-terminal domain
Length = 520
Score = 26.6 bits (56), Expect = 2.2
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
Frame = +1
Query: 16 DIYNIN-VPPI*LQRLPRPSNRNALLLHGRNRQGAVVPTRADSQEVLPPVKSIILILFXF 192
DI I P I + L S++ L+ R + D + L P K ++ +LF F
Sbjct: 165 DIKEIRFTPKIEAKDLKFKSDQALKLMESGYRVKCLAVPDKDKHKELEPEK-LLELLFRF 223
Query: 193 LCNNTKRXVVSWPRVVRAG 249
C V SWP R G
Sbjct: 224 TCFIGDALVESWPEADRKG 242
>At4g22165.1 68417.m03204 F-box family protein contains F-box domain
Pfam:PF00646
Length = 363
Score = 26.2 bits (55), Expect = 3.0
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 89 CFTAEIGRGRWYLPARTH 142
C + ++ R RW+LP+ TH
Sbjct: 345 CSSLQLYRSRWFLPSLTH 362
>At3g17740.1 68416.m02264 expressed protein
Length = 1149
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +1
Query: 19 IYNINVPPI*LQRLPRPSNRNALLLHGRNRQGAVVPTRADSQEVLPPVKS 168
IY +NVP L R +L + RNR+ +++ T D + KS
Sbjct: 156 IYRMNVPRYKLDNSQRVPGSGSLRFYLRNRRSSMLDTEIDIDSLEGRAKS 205
>At2g43800.1 68415.m05445 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 894
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 15 RHLQHKCATHIVTTAAPPFKP 77
RHL H+ +VT A PP++P
Sbjct: 27 RHLLHQPFFPVVTAAPPPYQP 47
>At3g24715.1 68416.m03103 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein contains Pfam profile
PF00564: PB1 domain
Length = 756
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 125 GTTAPCLFLP*SSNAFRFEGRGSRCNYMG 39
G +APC+FLP + + F G G + G
Sbjct: 146 GMSAPCVFLPERTQSNNFTGGGGDFDRFG 174
>At5g04260.1 68418.m00417 thioredoxin family protein low similarity
to SP|P29429 Thioredoxin. [Aspergillus nidulans]
{Emericella nidulans}; contains Pfam profile: PF00085
Thioredoxin
Length = 192
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 94 EAVMRFGLKGGAAVVTIWVAHLCCRCL 14
+ VM K G +VV +W+A C +C+
Sbjct: 88 DQVMEDAQKLGESVVIVWMAAWCRKCI 114
>At2g25050.1 68415.m02996 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 1111
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +2
Query: 26 T*MCHPYSYNGCPALQTET--HYCFTAE 103
T M +P Y GCP L ET H+ +AE
Sbjct: 51 TIMDYPRHYEGCPLLTMETVHHFLKSAE 78
>At1g78955.1 68414.m09205 beta-amyrin synthase, putative similar to
beta-Amyrin Synthase GI:3688600 from [Panax ginseng] and
GI:8918271 from [Pisum sativum]
Length = 769
Score = 25.0 bits (52), Expect = 6.8
Identities = 8/25 (32%), Positives = 13/25 (52%)
Frame = +2
Query: 47 SYNGCPALQTETHYCFTAEIGRGRW 121
+YN C A++ H+ T + G W
Sbjct: 634 TYNNCLAMRKGVHFLLTTQKDNGGW 658
>At5g10940.1 68418.m01269 transducin family protein / WD-40 repeat
family protein unnamed ORF cDNA FLJ10872, Homo sapiens,
EMBL:AK001734; contains Pfam PF00400: WD domain, G-beta
repeat (6 copies,1 weak)
Length = 757
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Frame = -2
Query: 148 PLVSPRG*VPPPPA--YFC 98
PL S R +PPPP YFC
Sbjct: 250 PLASSRKRMPPPPCVNYFC 268
>At4g21210.1 68417.m03066 expressed protein contains Pfam domain
PF03618: Domain of unknown function (DUF299)
Length = 403
Score = 24.6 bits (51), Expect = 9.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 120 GTYPRGLTRGPTTSKIN 170
GT P GL+RG T S +N
Sbjct: 219 GTNPSGLSRGITNSSLN 235
>At3g58050.1 68416.m06471 expressed protein
Length = 1209
Score = 24.6 bits (51), Expect = 9.0
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +2
Query: 53 NGCPALQTETHYC 91
+GCP+ + E HYC
Sbjct: 634 DGCPSPRAENHYC 646
>At1g58190.1 68414.m06605 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 1784
Score = 24.6 bits (51), Expect = 9.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 4 LEAIDIYNINVPPI*LQRLPRPSNRNALLLHGRNRQG 114
LE +D+ N V L L S+ L+LHG N +G
Sbjct: 129 LEILDMGNNEVNNSVLPFLNAASSLRTLILHGNNMEG 165
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,704,024
Number of Sequences: 28952
Number of extensions: 104261
Number of successful extensions: 217
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 12,070,560
effective HSP length: 68
effective length of database: 10,101,824
effective search space used: 212138304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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