Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0872.Seq
         (598 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P04540 Cluster: NADH-ubiquinone oxidoreductase chain 5;...    34   2.2  
UniRef50_P39001 Cluster: Transcriptional regulatory protein UME6...    34   2.9  
UniRef50_A7RZK1 Cluster: Predicted protein; n=1; Nematostella ve...    33   5.1  
UniRef50_Q6CEV0 Cluster: Similarity; n=1; Yarrowia lipolytica|Re...    33   5.1  
UniRef50_A3UX31 Cluster: Putative phage gene; n=1; Vibrio splend...    32   8.9  

>UniRef50_P04540 Cluster: NADH-ubiquinone oxidoreductase chain 5;
           n=4; Trypanosomatidae|Rep: NADH-ubiquinone
           oxidoreductase chain 5 - Trypanosoma brucei brucei
          Length = 590

 Score = 34.3 bits (75), Expect = 2.2
 Identities = 21/83 (25%), Positives = 35/83 (42%)
 Frame = -3

Query: 260 FRLAVCIAGVMGTE*THLLVSFWFSLIAISFSVTLKFLSNALTVPCCFASSLIIISSFVC 81
           F  A C   ++G     L+  FW+   A+ F     F+     V   FA S+I +S+  C
Sbjct: 133 FLTAYCGWELLGLFSFFLISYFWYRFFALKFGFKAFFIGKIGDVLLIFAFSIIFLSNGFC 192

Query: 80  TASISFKSLDVRGLCMLIYAICL 12
             +  F +        + ++ICL
Sbjct: 193 MTTFYFLNFFCMDYYYIEFSICL 215


>UniRef50_P39001 Cluster: Transcriptional regulatory protein UME6;
            n=2; Saccharomyces cerevisiae|Rep: Transcriptional
            regulatory protein UME6 - Saccharomyces cerevisiae
            (Baker's yeast)
          Length = 836

 Score = 33.9 bits (74), Expect = 2.9
 Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 1/173 (0%)
 Frame = +3

Query: 60   LETNGSCTYKRTYNNQ*RRKT-TRHGQGIAEKLQSDRKRNGYQREPKRY*QMCLLGTHNA 236
            L  N       T+ ++ R+ T  ++G+ I  +L +  ++   +  P +  +  +     A
Sbjct: 612  LNLNSKKVLDPTFESRTRQVTWNKNGKRIDRRLSAPEQQQQLEVPPLKKSRRSVGNARVA 671

Query: 237  SDTNS*TKSISEAKKAFLNATVSPNAPPTKPAKGSNQQYIMHN*IL*RKSEDTRSTGGGM 416
            S TNS   S+ E+     + + +P++P  K + G        N      S D   + G  
Sbjct: 672  SQTNSDYNSLGES-----STSSAPSSPSLKASSGLAYTADYPN----ATSPDFAKSKGKN 722

Query: 417  T*KHQVMLRAKKRQTKRPTLGVCKRKIDPNQESXLN*NCRTFTGGRYRANCTV 575
              K +   +AK+   KRP     K K + +QES  N    T  G R R  C +
Sbjct: 723  V-KPKAKSKAKQSSKKRPNNTTSKSKANNSQESN-NATSSTSQGTRSRTGCWI 773


>UniRef50_A7RZK1 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 189

 Score = 33.1 bits (72), Expect = 5.1
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
 Frame = +1

Query: 133 VKALLRNFRVTEK--EMAIKENQNDTNKCVYSVPITPAIQTARRNQLAKRRKPS*MQQLV 306
           ++ LL   ++ E+  E+A K + N +     S   +P+      NQL K R+      L 
Sbjct: 5   IEQLLEAAKILEERDEVAKKRSPNSSRNQKKSARRSPSYSRTTHNQLEKNRRAHLRDCLE 64

Query: 307 LM----PLPPNRQKDRTNSTLCTTRYYNEKAKTRE 399
           L+    P PP  QK  T + L + + Y +  +T E
Sbjct: 65  LLKELVPAPPEHQKATTLALLQSAQQYIQVLQTSE 99


>UniRef50_Q6CEV0 Cluster: Similarity; n=1; Yarrowia lipolytica|Rep:
           Similarity - Yarrowia lipolytica (Candida lipolytica)
          Length = 995

 Score = 33.1 bits (72), Expect = 5.1
 Identities = 21/79 (26%), Positives = 38/79 (48%)
 Frame = +1

Query: 115 AKQHGTVKALLRNFRVTEKEMAIKENQNDTNKCVYSVPITPAIQTARRNQLAKRRKPS*M 294
           A++   +  L R F   +K++  K    DT+  V+++P TPA    R+    ++ +P   
Sbjct: 735 AERDKEIARLTREFEERDKQLLAKGVGKDTSPDVFNIPATPAPLRVRKQ---RKDRPISD 791

Query: 295 QQLVLMPLPPNRQKDRTNS 351
           + L  +P  P R   R +S
Sbjct: 792 RPLSEVPQIPKRSASRRSS 810


>UniRef50_A3UX31 Cluster: Putative phage gene; n=1; Vibrio
           splendidus 12B01|Rep: Putative phage gene - Vibrio
           splendidus 12B01
          Length = 903

 Score = 32.3 bits (70), Expect = 8.9
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 5/56 (8%)
 Frame = +1

Query: 133 VKALLRNFR---VTEKEMAIKENQNDTNKCVYSVPITPAIQTAR--RNQLAKRRKP 285
           V+ +L N++    T+K   + E  NDT +  ++ P TP  + AR   +Q  K RKP
Sbjct: 116 VRMVLANYKKLPTTQKVALLSEEHNDTEQSNFTRPNTPVAEQARFDFDQAEKNRKP 171


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 538,289,199
Number of Sequences: 1657284
Number of extensions: 9426712
Number of successful extensions: 25107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 24384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25099
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41902926763
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)