Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0872.Seq
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    27   2.7  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    26   3.6  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    25   6.3  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    25   8.4  

>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -2

Query: 486 YILPAWVASFGVSLLLTSLDVFKSCLRQCFSCLRFFVIISSCA*CTV 346
           +I PAW  + G +  +     F   L  C    R++  I+SCA  T+
Sbjct: 156 FIDPAWGFAVGWNYFMNYFVTFPLELTTCAITFRYWTDINSCAWITI 202


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 255 TKSISEAKKAFLNATVSPNAPPTKPAKGSNQQYI 356
           TKS  E+ K+     +SP  PP  P  GS  + +
Sbjct: 158 TKSSVESNKSLSIEIMSPQKPPLSPFGGSRDRLV 191


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +1

Query: 49  TSRLLKLMEAVHTKELIIISDDAKQHGTVKALLRNFRVTE--KEMAIKENQ 195
           T   L LM  VH  ++  I D   +H  +   +RN  +TE  K+ ++ +NQ
Sbjct: 179 TMSALNLMAIVHATDIASIRDLKYKHIPLLENIRNKVLTEVPKQFSVDKNQ 229


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +1

Query: 55  RLLKLMEAVHTKELIIISDDAKQHG-TVKALLRNFRVTEKEMAIKENQND 201
           ++L L+E    +E   IS    ++  TVK L R  R++E EMA+KE +++
Sbjct: 323 KILDLLEMKQQEENDRISHIEYENDLTVKKLKR--RISELEMAVKEYESE 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,257,474
Number of Sequences: 5004
Number of extensions: 41440
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)