BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0872.Seq (598 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 10_06_0042 - 10015657-10017840 28 6.5 03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,449... 28 6.5 12_02_1015 + 25331667-25332169,25333305-25333406,25333775-253339... 27 8.6 11_06_0026 - 19351596-19351605,19353216-19353721 27 8.6 02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377... 27 8.6 >10_06_0042 - 10015657-10017840 Length = 727 Score = 27.9 bits (59), Expect = 6.5 Identities = 11/22 (50%), Positives = 15/22 (68%) Frame = -2 Query: 489 SYILPAWVASFGVSLLLTSLDV 424 SY++ WVA G+ LLL SL + Sbjct: 51 SYLVAGWVAVVGLGLLLNSLSI 72 >03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471, 4498179-4499263,4499351-4500296 Length = 1264 Score = 27.9 bits (59), Expect = 6.5 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = +3 Query: 48 NIEALETNGSCTYKRTYNNQ*RRKTTRHGQGIAEKLQSDRKRNG 179 +IEA ET+G+ T + + RRK G G+A K + +G Sbjct: 1004 SIEAPETSGNLTIRVARDKGKRRKRKVGGAGLAAKFEVSSSHSG 1047 >12_02_1015 + 25331667-25332169,25333305-25333406,25333775-25333919, 25334002-25334186,25334297-25334401,25334507-25334604, 25334686-25334924,25335030-25335123,25335190-25335275, 25335579-25335677,25335804-25335869 Length = 573 Score = 27.5 bits (58), Expect = 8.6 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = -3 Query: 167 SVTLKFLSNALTVPCCFASSLIIISSFVCTASI-SFKSLDVRGLCML 30 S L L ++L C +L I S +C ++ S +S ++RGLCML Sbjct: 271 STDLISLMDSLGRTCSNLRNLHISSIHLCNEAVFSLESANLRGLCML 317 >11_06_0026 - 19351596-19351605,19353216-19353721 Length = 171 Score = 27.5 bits (58), Expect = 8.6 Identities = 15/47 (31%), Positives = 22/47 (46%) Frame = +1 Query: 40 RPLTSRLLKLMEAVHTKELIIISDDAKQHGTVKALLRNFRVTEKEMA 180 R L +L K EAV +E I + + +H + A EKE+A Sbjct: 66 RQLGEQLTKREEAVAGREAIHLESNCAEHAAMAARASELEAWEKELA 112 >02_05_1331 + 35736543-35736638,35737407-35737525,35737670-35737715, 35738117-35738172,35738452-35738547,35738844-35738961, 35739406-35739672,35740023-35740124,35740302-35740659, 35740750-35740863,35741045-35741676,35741895-35742103, 35742597-35742819,35743419-35743538,35743888-35743914, 35744281-35745045,35745431-35748511 Length = 2142 Score = 27.5 bits (58), Expect = 8.6 Identities = 9/19 (47%), Positives = 16/19 (84%) Frame = -2 Query: 450 SLLLTSLDVFKSCLRQCFS 394 ++L T+LD+F +C+ QC+S Sbjct: 1101 NILQTNLDLFPACIDQCYS 1119 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,764,390 Number of Sequences: 37544 Number of extensions: 261293 Number of successful extensions: 584 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 579 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 584 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1423789920 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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