Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0872.Seq
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0042 - 10015657-10017840                                         28   6.5  
03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,449...    28   6.5  
12_02_1015 + 25331667-25332169,25333305-25333406,25333775-253339...    27   8.6  
11_06_0026 - 19351596-19351605,19353216-19353721                       27   8.6  
02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377...    27   8.6  

>10_06_0042 - 10015657-10017840
          Length = 727

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 489 SYILPAWVASFGVSLLLTSLDV 424
           SY++  WVA  G+ LLL SL +
Sbjct: 51  SYLVAGWVAVVGLGLLLNSLSI 72


>03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,
            4498179-4499263,4499351-4500296
          Length = 1264

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 48   NIEALETNGSCTYKRTYNNQ*RRKTTRHGQGIAEKLQSDRKRNG 179
            +IEA ET+G+ T +   +   RRK    G G+A K +     +G
Sbjct: 1004 SIEAPETSGNLTIRVARDKGKRRKRKVGGAGLAAKFEVSSSHSG 1047


>12_02_1015 +
           25331667-25332169,25333305-25333406,25333775-25333919,
           25334002-25334186,25334297-25334401,25334507-25334604,
           25334686-25334924,25335030-25335123,25335190-25335275,
           25335579-25335677,25335804-25335869
          Length = 573

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 167 SVTLKFLSNALTVPCCFASSLIIISSFVCTASI-SFKSLDVRGLCML 30
           S  L  L ++L   C    +L I S  +C  ++ S +S ++RGLCML
Sbjct: 271 STDLISLMDSLGRTCSNLRNLHISSIHLCNEAVFSLESANLRGLCML 317


>11_06_0026 - 19351596-19351605,19353216-19353721
          Length = 171

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +1

Query: 40  RPLTSRLLKLMEAVHTKELIIISDDAKQHGTVKALLRNFRVTEKEMA 180
           R L  +L K  EAV  +E I +  +  +H  + A        EKE+A
Sbjct: 66  RQLGEQLTKREEAVAGREAIHLESNCAEHAAMAARASELEAWEKELA 112


>02_05_1331 + 35736543-35736638,35737407-35737525,35737670-35737715,
            35738117-35738172,35738452-35738547,35738844-35738961,
            35739406-35739672,35740023-35740124,35740302-35740659,
            35740750-35740863,35741045-35741676,35741895-35742103,
            35742597-35742819,35743419-35743538,35743888-35743914,
            35744281-35745045,35745431-35748511
          Length = 2142

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -2

Query: 450  SLLLTSLDVFKSCLRQCFS 394
            ++L T+LD+F +C+ QC+S
Sbjct: 1101 NILQTNLDLFPACIDQCYS 1119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,764,390
Number of Sequences: 37544
Number of extensions: 261293
Number of successful extensions: 584
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)