Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0872.Seq
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)                31   0.71 
SB_16071| Best HMM Match : DUF939 (HMM E-Value=1.2)                    29   3.8  
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_14137| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_78| Best HMM Match : No HMM Matches (HMM E-Value=.)                 27   8.7  

>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 19/54 (35%), Positives = 31/54 (57%)
 Frame = -3

Query: 173  SFSVTLKFLSNALTVPCCFASSLIIISSFVCTASISFKSLDVRGLCMLIYAICL 12
            + SV+L+FL   L   C FA S+ +   ++C   I   S+ +R +C  +YAIC+
Sbjct: 1959 ALSVSLRFLY--LCAFCIFALSVSLRYLYLCAICIFALSVSLRYIC--LYAICI 2008


>SB_16071| Best HMM Match : DUF939 (HMM E-Value=1.2)
          Length = 545

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/48 (22%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 219 VNTFVSIVLVLFDSHFFFGHSE-VSQQCLDRAVLFCVVTDYYKFFCMY 79
           +   +S++++++ +H  F     V    L R+V +C++ DY+   C++
Sbjct: 251 ITIIISLIIIIYVTHIIFNIIIIVINVTLHRSVSYCLLCDYFSPECIH 298


>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3235

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 163 TEKEMAIKENQNDTNKCVYSVPITP 237
           TE+E+ +K+N++ T  C Y VP TP
Sbjct: 655 TEQEVVVKDNEDHTYSCRY-VPNTP 678


>SB_14137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 60

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +3

Query: 306 PNAPPTKPAKGSNQQYI 356
           P APP +PA+G NQQYI
Sbjct: 13  PQAPPMQPAQG-NQQYI 28


>SB_78| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
 Frame = +3

Query: 114 RKTTRHGQGIAE--KLQSDRKRNGYQREPKRY*QMCLLGTHNASDTNS*TKSISEAKKAF 287
           RKT R G  +A+  K ++D  R  + + P    +  +L  HN ++T + + SI   KK F
Sbjct: 5   RKTPRGGAILAKQRKKRNDDSRYVFPKIPADLTREMIL-QHNVNNTYTSSYSIDYVKKNF 63

Query: 288 LN 293
           LN
Sbjct: 64  LN 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,287,619
Number of Sequences: 59808
Number of extensions: 318058
Number of successful extensions: 1091
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)