Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0872.Seq
         (598 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC044830-1|AAH44830.1|  258|Homo sapiens chromosome 10 open read...    29   9.5  

>BC044830-1|AAH44830.1|  258|Homo sapiens chromosome 10 open reading
           frame 96 protein.
          Length = 258

 Score = 29.5 bits (63), Expect = 9.5
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 10/143 (6%)
 Frame = +1

Query: 1   NNTYKQMA*ISIHRPLTSRLLKLMEAVHTKELIIISDDAKQHGTVKALLRNFRVTEK-EM 177
           N   KQ + I+ HR +   LL+  EA+  +   +I ++ K    +     ++ +T+K E+
Sbjct: 74  NALEKQYSEITNHRNM---LLQTFEAIKKQ---MIEEEDKFIKEITDFNNDYEITKKREL 127

Query: 178 AIKEN--------QNDTNKCVYSVPITPAIQTARRNQLAKRRKPS*MQQLVLMPLPPNRQ 333
            +KEN        +N  N  + S   +    +++ N+L K+ K   +Q+L  +       
Sbjct: 128 LMKENVKIEISDLENQANM-LKSEMKSMEHDSSQLNELQKQ-KSELIQELFTLQRKLKVF 185

Query: 334 KDRTNSTLCTTRYYN-EKAKTRE 399
           +D  N ++CTT+Y   EK K  E
Sbjct: 186 EDEENESICTTKYLEAEKIKISE 208


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,097,926
Number of Sequences: 237096
Number of extensions: 1440512
Number of successful extensions: 7611
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 7501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7610
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)