BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0872.Seq (598 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U41033-5|AAA82377.1| 675|Caenorhabditis elegans Hypothetical pr... 28 5.8 Z93382-8|CAB07619.1| 160|Caenorhabditis elegans Hypothetical pr... 27 7.7 U13071-2|AAL65793.1| 988|Caenorhabditis elegans Hypothetical pr... 27 7.7 >U41033-5|AAA82377.1| 675|Caenorhabditis elegans Hypothetical protein K09E3.1 protein. Length = 675 Score = 27.9 bits (59), Expect = 5.8 Identities = 22/73 (30%), Positives = 35/73 (47%) Frame = +1 Query: 46 LTSRLLKLMEAVHTKELIIISDDAKQHGTVKALLRNFRVTEKEMAIKENQNDTNKCVYSV 225 LT RLL +EA+ T + + S+ Q +V+ L TEK + + T S+ Sbjct: 412 LTHRLLAAIEAIATSQSQMQSELTSQGRSVQVLTDRMEATEKLIVEPKILKTTVAEETSM 471 Query: 226 PITPAIQTARRNQ 264 P P +TA++ Q Sbjct: 472 P-QPTHETAQQQQ 483 >Z93382-8|CAB07619.1| 160|Caenorhabditis elegans Hypothetical protein F45G2.10 protein. Length = 160 Score = 27.5 bits (58), Expect = 7.7 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Frame = +1 Query: 61 LKLMEAVHTKELIIISDDAKQHGTVKALLRNFRVTEKEMAIKENQ---NDTNKCV 216 +KL+ ++H K + +S H T +++ R E+ A ENQ + N+C+ Sbjct: 102 VKLLRSLHPKVKVSVSITPGSHSTEESINRQLADKERVAAAMENQGLMHAVNECL 156 >U13071-2|AAL65793.1| 988|Caenorhabditis elegans Hypothetical protein T22F7.3 protein. Length = 988 Score = 27.5 bits (58), Expect = 7.7 Identities = 9/13 (69%), Positives = 10/13 (76%) Frame = -3 Query: 572 GTVCTIAASCECP 534 GT+CT A CECP Sbjct: 92 GTICTSAGLCECP 104 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,657,138 Number of Sequences: 27780 Number of extensions: 238594 Number of successful extensions: 786 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 756 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 786 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1268802960 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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