Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0872.Seq
         (598 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z93382-8|CAB07619.1|  160|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U13071-2|AAL65793.1|  988|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 22/73 (30%), Positives = 35/73 (47%)
 Frame = +1

Query: 46  LTSRLLKLMEAVHTKELIIISDDAKQHGTVKALLRNFRVTEKEMAIKENQNDTNKCVYSV 225
           LT RLL  +EA+ T +  + S+   Q  +V+ L      TEK +   +    T     S+
Sbjct: 412 LTHRLLAAIEAIATSQSQMQSELTSQGRSVQVLTDRMEATEKLIVEPKILKTTVAEETSM 471

Query: 226 PITPAIQTARRNQ 264
           P  P  +TA++ Q
Sbjct: 472 P-QPTHETAQQQQ 483


>Z93382-8|CAB07619.1|  160|Caenorhabditis elegans Hypothetical
           protein F45G2.10 protein.
          Length = 160

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +1

Query: 61  LKLMEAVHTKELIIISDDAKQHGTVKALLRNFRVTEKEMAIKENQ---NDTNKCV 216
           +KL+ ++H K  + +S     H T +++ R     E+  A  ENQ   +  N+C+
Sbjct: 102 VKLLRSLHPKVKVSVSITPGSHSTEESINRQLADKERVAAAMENQGLMHAVNECL 156


>U13071-2|AAL65793.1|  988|Caenorhabditis elegans Hypothetical
           protein T22F7.3 protein.
          Length = 988

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -3

Query: 572 GTVCTIAASCECP 534
           GT+CT A  CECP
Sbjct: 92  GTICTSAGLCECP 104


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,657,138
Number of Sequences: 27780
Number of extensions: 238594
Number of successful extensions: 786
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)