Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0872.Seq
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15680.1 68418.m01834 expressed protein                             29   2.4  
At1g69710.1 68414.m08022 zinc finger protein, putative / regulat...    28   4.1  
At3g52000.1 68416.m05704 serine carboxypeptidase S10 family prot...    28   5.4  

>At5g15680.1 68418.m01834 expressed protein 
          Length = 2151

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = -2

Query: 450  SLLLTSLDVFKSCLRQCF 397
            +LLLT+LD+F +C+ QC+
Sbjct: 1115 NLLLTNLDLFPACIDQCY 1132


>At1g69710.1 68414.m08022 zinc finger protein, putative / regulator
           of chromosome condensation (RCC1) family protein similar
           to zinc finger protein [Arabidopsis thaliana]
           gi|15811367|gb|AAL08940
          Length = 1028

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = +1

Query: 106 SDDAKQHGTVKALLRNFRVTEKEMAIKENQNDT 204
           +D+A+++ + K ++R+     KEMA K++Q D+
Sbjct: 882 ADEAEENRSAKEVIRSLTTQLKEMAEKQSQKDS 914


>At3g52000.1 68416.m05704 serine carboxypeptidase S10 family protein
           similar to SP|P52711 Serine carboxypeptidase II-3
           precursor (EC 3.4.16.6) Hordeum vulgare; contains Pfam
           profile PF0450 serine carboxypeptidase
          Length = 482

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 186 FDSHFFFGHSEVSQQCLDRAVLFCVVTDYY 97
           F   F F H  +SQQ +D    FC  +D Y
Sbjct: 252 FGYKFMFSHGLISQQQMDNYNKFCTDSDLY 281


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,818,715
Number of Sequences: 28952
Number of extensions: 212760
Number of successful extensions: 552
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)