Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0870.Seq
         (449 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    23   1.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.8  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   3.1  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   3.1  

>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 76  PFRWCISRKGHRPRES 123
           PF+W   +K  R RES
Sbjct: 323 PFKWLFKKKKRRNRES 338


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 283 GHAVGDIPGVR 315
           G AVGD+PG+R
Sbjct: 62  GTAVGDVPGLR 72


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 315 TNSGNVTDGVTFTTESRH*YSSFSSMWFRQPSRGTNAVT 199
           TN+  +T   +  TES   Y+SF   +  + S+   A T
Sbjct: 458 TNNAIMTPPASVQTESSDNYNSFHQFYSSESSQNQVAPT 496


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 315 TNSGNVTDGVTFTTESRH*YSSFSSMWFRQPSRGTNAVT 199
           TN+  +T   +  TES   Y+SF   +  + S+   A T
Sbjct: 406 TNNAIMTPPASVQTESSDNYNSFHQFYSSESSQNQVAPT 444


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,073
Number of Sequences: 336
Number of extensions: 2196
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10195961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)