Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0870.Seq
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   154   5e-39
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   154   5e-39
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    40   2e-04
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    25   4.1  
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||...    25   4.1  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   5.4  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   7.1  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  154 bits (374), Expect = 5e-39
 Identities = 67/85 (78%), Positives = 78/85 (91%)
 Frame = +2

Query: 2   NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 181
           NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQL
Sbjct: 15  NHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQL 74

Query: 182 IKNGKKVTAFVPRDGCLNHIEENDE 256
           IKNGKKVTAFVP DGCLN ++ENDE
Sbjct: 75  IKNGKKVTAFVPHDGCLNFVDENDE 99



 Score = 55.6 bits (128), Expect = 3e-09
 Identities = 27/39 (69%), Positives = 30/39 (76%)
 Frame = +1

Query: 256 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLSLSTKRKR 372
           VL++GFGRKG A GDIPGVRFKVVKVA V LS     K+
Sbjct: 100 VLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKK 138


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  154 bits (374), Expect = 5e-39
 Identities = 67/85 (78%), Positives = 78/85 (91%)
 Frame = +2

Query: 2   NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 181
           NHRRE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQL
Sbjct: 15  NHRREERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQL 74

Query: 182 IKNGKKVTAFVPRDGCLNHIEENDE 256
           IKNGKKVTAFVP DGCLN ++ENDE
Sbjct: 75  IKNGKKVTAFVPHDGCLNFVDENDE 99



 Score = 55.6 bits (128), Expect = 3e-09
 Identities = 27/39 (69%), Positives = 30/39 (76%)
 Frame = +1

Query: 256 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLSLSTKRKR 372
           VL++GFGRKG A GDIPGVRFKVVKVA V LS     K+
Sbjct: 100 VLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKK 138


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 39.9 bits (89), Expect = 2e-04
 Identities = 19/47 (40%), Positives = 29/47 (61%)
 Frame = +2

Query: 86  GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDG 226
           G+   +G+      V+ K+PNSA+RK  RV+L   G+ VTA++P  G
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIPGIG 92


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +2

Query: 23  WADKEFKKAHMGTKWKANPFGGASHAKGIV 112
           W D EF   H   K+   PF   +H K  V
Sbjct: 253 WFDIEFSACHKPIKFSTGPFSRYTHWKQTV 282


>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 143 PNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEY 259
           P +A   C+    IK    +T+ +PR+  +NH  E + Y
Sbjct: 32  PPNAAAMCM--DCIKMTTDITSGIPRESTVNHCRECERY 68


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 321 LKTNSGNVTDGVTFTTESRH*YSSFSSMWFRQPSR 217
           +K  +  VTD     T+S H Y   + M FR+  R
Sbjct: 670 IKALTSTVTDSTLVDTQSFHPYKVVTDMIFREDRR 704


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +2

Query: 221  DGCLNHIEENDEY*WR 268
            D C+ H+E N+E  W+
Sbjct: 1830 DSCVRHLENNEETDWK 1845


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,930,756
Number of Sequences: 5004
Number of extensions: 37619
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)