Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0870.Seq
(449 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 151 3e-37
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 151 3e-37
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 142 2e-34
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 47 8e-06
04_01_0440 + 5746474-5746662,5746895-5747251 28 3.0
03_05_0173 + 21502765-21504216 27 5.3
12_02_0494 + 19689245-19689414,19689605-19689894,19690665-19690747 27 9.2
11_05_0043 - 18561039-18562114,18562338-18562503 27 9.2
04_01_0430 + 5651326-5651820,5651886-5652124,5652265-5652507,565... 27 9.2
03_01_0298 + 2318836-2319051,2321238-2323106 27 9.2
02_01_0335 + 2386902-2386906,2386976-2387282,2387664-2387777,239... 27 9.2
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 151 bits (366), Expect = 3e-37
Identities = 65/84 (77%), Positives = 74/84 (88%)
Frame = +2
Query: 5 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 184
HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+
Sbjct: 16 HRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 74
Query: 185 KNGKKVTAFVPRDGCLNHIEENDE 256
KNGKK+ AFVP DGCLN IEENDE
Sbjct: 75 KNGKKIAAFVPNDGCLNFIEENDE 98
Score = 64.1 bits (149), Expect = 5e-11
Identities = 30/39 (76%), Positives = 33/39 (84%)
Frame = +1
Query: 256 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLSLSTKRKR 372
VL+AGFGRKGHAVGDIPGVRFKVVKV+ VSL K K+
Sbjct: 99 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +3
Query: 348 LALYKEKKERPRS 386
LAL+KEKKE+PRS
Sbjct: 130 LALFKEKKEKPRS 142
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 151 bits (366), Expect = 3e-37
Identities = 65/84 (77%), Positives = 74/84 (88%)
Frame = +2
Query: 5 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 184
HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+
Sbjct: 16 HRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 74
Query: 185 KNGKKVTAFVPRDGCLNHIEENDE 256
KNGKK+ AFVP DGCLN IEENDE
Sbjct: 75 KNGKKIAAFVPNDGCLNFIEENDE 98
Score = 151 bits (366), Expect = 3e-37
Identities = 65/84 (77%), Positives = 74/84 (88%)
Frame = +2
Query: 5 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 184
HRR QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL+
Sbjct: 186 HRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLV 244
Query: 185 KNGKKVTAFVPRDGCLNHIEENDE 256
KNGKK+ AFVP DGCLN IEENDE
Sbjct: 245 KNGKKIAAFVPNDGCLNFIEENDE 268
Score = 65.3 bits (152), Expect = 2e-11
Identities = 31/45 (68%), Positives = 34/45 (75%)
Frame = +1
Query: 256 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLSLSTKRKRSDQDHR 390
VL+AGFGRKGHAVGDIPGVRFKVVKV+ VSL K K+ R
Sbjct: 99 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPSRR 143
Score = 64.1 bits (149), Expect = 5e-11
Identities = 30/39 (76%), Positives = 33/39 (84%)
Frame = +1
Query: 256 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLSLSTKRKR 372
VL+AGFGRKGHAVGDIPGVRFKVVKV+ VSL K K+
Sbjct: 269 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 307
Score = 27.5 bits (58), Expect = 5.3
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +3
Query: 348 LALYKEKKERPRS 386
LAL+KEKKE+PRS
Sbjct: 300 LALFKEKKEKPRS 312
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 142 bits (343), Expect = 2e-34
Identities = 61/83 (73%), Positives = 71/83 (85%)
Frame = +2
Query: 5 HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 184
HRR QRWADK +KK+H G +WK PF G+SHAKGIVLEK+G+EAKQPNSAI KC RVQL+
Sbjct: 87 HRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAICKCARVQLV 145
Query: 185 KNGKKVTAFVPRDGCLNHIEEND 253
KNGKK+ AFVP DGCLN I+EN+
Sbjct: 146 KNGKKIAAFVPNDGCLNFIKENE 168
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 46.8 bits (106), Expect = 8e-06
Identities = 20/25 (80%), Positives = 23/25 (92%)
Frame = +1
Query: 256 VLVAGFGRKGHAVGDIPGVRFKVVK 330
VL++GFG KGHAVGDI GVRF+VVK
Sbjct: 69 VLISGFGHKGHAVGDIRGVRFEVVK 93
>04_01_0440 + 5746474-5746662,5746895-5747251
Length = 181
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 19 AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 117
A+GG P GY+ +G PF C KG+ PR
Sbjct: 126 AIGGMPAIAVPAGYDNQGVPFAICFGGLKGYEPR 159
>03_05_0173 + 21502765-21504216
Length = 483
Score = 27.5 bits (58), Expect = 5.3
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = -1
Query: 305 GMSPTA*PLRPNPATSTRRFLRCGLGNRHGGR 210
G P A PNPA + ++ R G NR GGR
Sbjct: 343 GPQPVAAGAAPNPAGNQQQGQRKGGANRRGGR 374
>12_02_0494 + 19689245-19689414,19689605-19689894,19690665-19690747
Length = 180
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 62 KWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKC 166
KW AN GG IVL + + ++ PNSA + C
Sbjct: 46 KWAAN-LGGTPPGSCIVLLHISLLSRVPNSAPKFC 79
>11_05_0043 - 18561039-18562114,18562338-18562503
Length = 413
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 218 RDGCLNHIEENDEY*WRDSVVKVTPSVTFPEFVLR 322
RDG EE+DEY ++V V P +T VLR
Sbjct: 361 RDGGEEEEEESDEYCEWGAMVGVGPGLTIETMVLR 395
>04_01_0430 +
5651326-5651820,5651886-5652124,5652265-5652507,
5653159-5653360,5653679-5654035
Length = 511
Score = 26.6 bits (56), Expect = 9.2
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +1
Query: 19 AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 117
A+GG P GY+ G PF C KG+ PR
Sbjct: 456 AIGGMPAITVPAGYDGHGVPFGICFGGLKGYEPR 489
>03_01_0298 + 2318836-2319051,2321238-2323106
Length = 694
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -2
Query: 169 DAFADGRVGLLSFYTNFLEDDALCVRCTTERVSL 68
DAFA GLLS ++D LC+ C E VSL
Sbjct: 422 DAFAQCMGGLLSVV---VKDMRLCIECIDEGVSL 452
>02_01_0335 +
2386902-2386906,2386976-2387282,2387664-2387777,
2390252-2390320,2390416-2390715,2390829-2390930,
2391085-2391279,2391377-2391664,2391942-2392128,
2393168-2393272,2393778-2393824,2393982-2394074
Length = 603
Score = 26.6 bits (56), Expect = 9.2
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +2
Query: 17 QRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGK 196
++W E K+ T++ F +HA G+++ G+E +++I K GK
Sbjct: 439 EKWRRAEVPKSDSVTQY----FKNITHANGVIIHPAGLECSL-HASIDALGSCYGDKQGK 493
Query: 197 KVTAFVPR 220
K A+V R
Sbjct: 494 KYRAWVDR 501
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,517,671
Number of Sequences: 37544
Number of extensions: 280931
Number of successful extensions: 665
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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