BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0870.Seq (449 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) 164 3e-41 SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) 93 1e-19 SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12) 36 0.020 SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13) 30 1.0 SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3 SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8 SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20) 27 5.4 SB_4259| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4 SB_47788| Best HMM Match : Cir_Bir_Yir (HMM E-Value=8.6) 27 5.4 SB_31820| Best HMM Match : CG-1 (HMM E-Value=2.4) 27 5.4 SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3) 27 5.4 >SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) Length = 413 Score = 164 bits (398), Expect = 3e-41 Identities = 73/85 (85%), Positives = 80/85 (94%) Frame = +2 Query: 2 NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 181 +HRR+Q+W DK +KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL Sbjct: 14 SHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 73 Query: 182 IKNGKKVTAFVPRDGCLNHIEENDE 256 IKNGKK+TAFVP DGCLN+IEENDE Sbjct: 74 IKNGKKITAFVPNDGCLNYIEENDE 98 Score = 40.7 bits (91), Expect = 5e-04 Identities = 15/19 (78%), Positives = 19/19 (100%) Frame = +1 Query: 256 VLVAGFGRKGHAVGDIPGV 312 VL++GFGR+GHAVGDIPG+ Sbjct: 99 VLISGFGRRGHAVGDIPGI 117 >SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0) Length = 143 Score = 92.7 bits (220), Expect = 1e-19 Identities = 41/47 (87%), Positives = 45/47 (95%) Frame = +2 Query: 116 EKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDE 256 ++ GVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN+IEENDE Sbjct: 53 QEPGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDE 99 Score = 65.3 bits (152), Expect = 2e-11 Identities = 30/39 (76%), Positives = 34/39 (87%) Frame = +1 Query: 256 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLSLSTKRKR 372 VL++GFGR+GHAVGDIPGVRFKVVKVANVSL K K+ Sbjct: 100 VLISGFGRRGHAVGDIPGVRFKVVKVANVSLLALFKEKK 138 Score = 28.7 bits (61), Expect = 2.3 Identities = 12/13 (92%), Positives = 13/13 (100%) Frame = +3 Query: 348 LALYKEKKERPRS 386 LAL+KEKKERPRS Sbjct: 131 LALFKEKKERPRS 143 >SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12) Length = 302 Score = 35.5 bits (78), Expect = 0.020 Identities = 16/39 (41%), Positives = 27/39 (69%) Frame = +2 Query: 101 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP 217 KG+ ++ + K+PNSA RKC ++L NGK ++A++P Sbjct: 230 KGVCVKVFIRKPKKPNSAQRKCALLKL-SNGKTISAYIP 267 >SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13) Length = 943 Score = 29.9 bits (64), Expect = 1.0 Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 8/113 (7%) Frame = -3 Query: 333 YFYHLKTNS---GNVTDGVTFTTES--RH*YSSFSSMWFRQPSRGTNAVTFFPFLMSCTR 169 YF+ L +S + G + TE RH ++ FS++ SR + + P L+ Sbjct: 827 YFHSLVVHSPIQSRLVSGRSVNTEQQERH-FNIFSAIAENTSSRRPDEI-ITPGLVRENL 884 Query: 168 THLRMAELGCLASTPTFSRTMPFA*D-APPKGLAFHFVPMW-AFLN-SLSAHR 19 T + G S F R +PF+ APPKG F VP+W +F N S+ HR Sbjct: 885 TRASIYLSGPELSRHRF-RKVPFSSVLAPPKGYRFLIVPLWRSFSNRSVFGHR 936 >SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1788 Score = 29.5 bits (63), Expect = 1.3 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = -3 Query: 405 LSQCTPMILVAPFSLCRERERHVGYFYHLKTNSGNVTDGVT 283 L P I+ P +LC+ R+ V F+ K S V +G+T Sbjct: 904 LKNTAPEIVCIPMTLCKRRDAFVPLFWCWKQFSTGVEEGLT 944 >SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 468 Score = 29.1 bits (62), Expect = 1.8 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = +1 Query: 46 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AA 144 S HG MEG P W +S G P+ S C S +A Sbjct: 85 SQHGTRMEGVPVCWYVSVWGLSPQVSQCDSVSA 117 >SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20) Length = 255 Score = 27.5 bits (58), Expect = 5.4 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = +3 Query: 6 TVVNSDGRTKNSRKPTWVRNGRLTLSVVHLT 98 T V R N++KP +R+GR+T+S+ +T Sbjct: 103 THVQFHHRDTNTKKPVHLRDGRVTVSLAAMT 133 >SB_4259| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 540 Score = 27.5 bits (58), Expect = 5.4 Identities = 12/46 (26%), Positives = 20/46 (43%) Frame = +1 Query: 262 VAGFGRKGHAVGDIPGVRFKVVKVANVSLSLSTKRKRSDQDHRCTL 399 + G+ KG+ +G IPG+ + + S +DH C L Sbjct: 34 IPGYRLKGYVIGSIPGISVEKCIIKCTKHSSCYSINHHQRDHLCEL 79 >SB_47788| Best HMM Match : Cir_Bir_Yir (HMM E-Value=8.6) Length = 294 Score = 27.5 bits (58), Expect = 5.4 Identities = 13/35 (37%), Positives = 16/35 (45%) Frame = -2 Query: 214 DECGHFLSVLNELYTDAFADGRVGLLSFYTNFLED 110 D+ F NE AD R GL+ NF+ED Sbjct: 114 DKLNRFFVTTNERTLGTKADDRSGLIELVNNFVED 148 >SB_31820| Best HMM Match : CG-1 (HMM E-Value=2.4) Length = 992 Score = 27.5 bits (58), Expect = 5.4 Identities = 17/55 (30%), Positives = 23/55 (41%) Frame = -1 Query: 356 ESERDTLATFTTLKRTPGMSPTA*PLRPNPATSTRRFLRCGLGNRHGGRMRSLSF 192 E+ R TL + + R +SP R N A S CG+ G R+R F Sbjct: 316 ENIRPTLLKYRDVWRAARLSPKCGIARENSAASCAHRHACGVPRMRGQRLRRRRF 370 >SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3) Length = 471 Score = 27.5 bits (58), Expect = 5.4 Identities = 13/35 (37%), Positives = 16/35 (45%) Frame = -2 Query: 214 DECGHFLSVLNELYTDAFADGRVGLLSFYTNFLED 110 D+ F NE AD R GL+ NF+ED Sbjct: 163 DKLNRFFVTTNERTLGTKADDRSGLIELVNNFVED 197 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,305,031 Number of Sequences: 59808 Number of extensions: 320058 Number of successful extensions: 651 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 597 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 650 length of database: 16,821,457 effective HSP length: 76 effective length of database: 12,276,049 effective search space used: 896151577 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -