Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0870.Seq
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              164   3e-41
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)               93   1e-19
SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)         36   0.020
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)                   30   1.0  
SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.3  
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)                 27   5.4  
SB_4259| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.4  
SB_47788| Best HMM Match : Cir_Bir_Yir (HMM E-Value=8.6)               27   5.4  
SB_31820| Best HMM Match : CG-1 (HMM E-Value=2.4)                      27   5.4  
SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3)                        27   5.4  

>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score =  164 bits (398), Expect = 3e-41
 Identities = 73/85 (85%), Positives = 80/85 (94%)
 Frame = +2

Query: 2   NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 181
           +HRR+Q+W DK +KKAH+GT  KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 14  SHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 73

Query: 182 IKNGKKVTAFVPRDGCLNHIEENDE 256
           IKNGKK+TAFVP DGCLN+IEENDE
Sbjct: 74  IKNGKKITAFVPNDGCLNYIEENDE 98



 Score = 40.7 bits (91), Expect = 5e-04
 Identities = 15/19 (78%), Positives = 19/19 (100%)
 Frame = +1

Query: 256 VLVAGFGRKGHAVGDIPGV 312
           VL++GFGR+GHAVGDIPG+
Sbjct: 99  VLISGFGRRGHAVGDIPGI 117


>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 143

 Score = 92.7 bits (220), Expect = 1e-19
 Identities = 41/47 (87%), Positives = 45/47 (95%)
 Frame = +2

Query: 116 EKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDE 256
           ++ GVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN+IEENDE
Sbjct: 53  QEPGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDE 99



 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 30/39 (76%), Positives = 34/39 (87%)
 Frame = +1

Query: 256 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLSLSTKRKR 372
           VL++GFGR+GHAVGDIPGVRFKVVKVANVSL    K K+
Sbjct: 100 VLISGFGRRGHAVGDIPGVRFKVVKVANVSLLALFKEKK 138



 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +3

Query: 348 LALYKEKKERPRS 386
           LAL+KEKKERPRS
Sbjct: 131 LALFKEKKERPRS 143


>SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)
          Length = 302

 Score = 35.5 bits (78), Expect = 0.020
 Identities = 16/39 (41%), Positives = 27/39 (69%)
 Frame = +2

Query: 101 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP 217
           KG+ ++    + K+PNSA RKC  ++L  NGK ++A++P
Sbjct: 230 KGVCVKVFIRKPKKPNSAQRKCALLKL-SNGKTISAYIP 267


>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
          Length = 943

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
 Frame = -3

Query: 333  YFYHLKTNS---GNVTDGVTFTTES--RH*YSSFSSMWFRQPSRGTNAVTFFPFLMSCTR 169
            YF+ L  +S     +  G +  TE   RH ++ FS++     SR  + +   P L+    
Sbjct: 827  YFHSLVVHSPIQSRLVSGRSVNTEQQERH-FNIFSAIAENTSSRRPDEI-ITPGLVRENL 884

Query: 168  THLRMAELGCLASTPTFSRTMPFA*D-APPKGLAFHFVPMW-AFLN-SLSAHR 19
            T   +   G   S   F R +PF+   APPKG  F  VP+W +F N S+  HR
Sbjct: 885  TRASIYLSGPELSRHRF-RKVPFSSVLAPPKGYRFLIVPLWRSFSNRSVFGHR 936


>SB_10556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1788

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 405  LSQCTPMILVAPFSLCRERERHVGYFYHLKTNSGNVTDGVT 283
            L    P I+  P +LC+ R+  V  F+  K  S  V +G+T
Sbjct: 904  LKNTAPEIVCIPMTLCKRRDAFVPLFWCWKQFSTGVEEGLT 944


>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 46  SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AA 144
           S HG  MEG P  W +S  G  P+ S C S +A
Sbjct: 85  SQHGTRMEGVPVCWYVSVWGLSPQVSQCDSVSA 117


>SB_32242| Best HMM Match : Pam16 (HMM E-Value=7.4e-20)
          Length = 255

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 6   TVVNSDGRTKNSRKPTWVRNGRLTLSVVHLT 98
           T V    R  N++KP  +R+GR+T+S+  +T
Sbjct: 103 THVQFHHRDTNTKKPVHLRDGRVTVSLAAMT 133


>SB_4259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 540

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +1

Query: 262 VAGFGRKGHAVGDIPGVRFKVVKVANVSLSLSTKRKRSDQDHRCTL 399
           + G+  KG+ +G IPG+  +   +     S         +DH C L
Sbjct: 34  IPGYRLKGYVIGSIPGISVEKCIIKCTKHSSCYSINHHQRDHLCEL 79


>SB_47788| Best HMM Match : Cir_Bir_Yir (HMM E-Value=8.6)
          Length = 294

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 214 DECGHFLSVLNELYTDAFADGRVGLLSFYTNFLED 110
           D+   F    NE      AD R GL+    NF+ED
Sbjct: 114 DKLNRFFVTTNERTLGTKADDRSGLIELVNNFVED 148


>SB_31820| Best HMM Match : CG-1 (HMM E-Value=2.4)
          Length = 992

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -1

Query: 356 ESERDTLATFTTLKRTPGMSPTA*PLRPNPATSTRRFLRCGLGNRHGGRMRSLSF 192
           E+ R TL  +  + R   +SP     R N A S      CG+    G R+R   F
Sbjct: 316 ENIRPTLLKYRDVWRAARLSPKCGIARENSAASCAHRHACGVPRMRGQRLRRRRF 370


>SB_4381| Best HMM Match : RVT_1 (HMM E-Value=3)
          Length = 471

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 214 DECGHFLSVLNELYTDAFADGRVGLLSFYTNFLED 110
           D+   F    NE      AD R GL+    NF+ED
Sbjct: 163 DKLNRFFVTTNERTLGTKADDRSGLIELVNNFVED 197


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,305,031
Number of Sequences: 59808
Number of extensions: 320058
Number of successful extensions: 651
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)