Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0870.Seq
(449 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S... 164 1e-40
CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein. 164 1e-40
BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23 p... 164 1e-40
AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23 p... 67 2e-11
Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal p... 43 4e-04
CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein. 43 4e-04
BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal... 43 4e-04
BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal... 43 4e-04
BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal... 43 4e-04
AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12 p... 43 4e-04
AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein. 30 4.2
AK098732-1|BAC05396.1| 166|Homo sapiens protein ( Homo sapiens ... 29 7.3
BC011396-1|AAH11396.2| 661|Homo sapiens pseudouridylate synthas... 29 9.7
BC005209-1|AAH05209.3| 311|Homo sapiens PUS7 protein protein. 29 9.7
AB067484-1|BAB67790.1| 645|Homo sapiens KIAA1897 protein protein. 29 9.7
>D14530-1|BAA03400.1| 143|Homo sapiens yeast ribosomal protein S28
homologue protein.
Length = 143
Score = 164 bits (398), Expect = 1e-40
Identities = 73/85 (85%), Positives = 80/85 (94%)
Frame = +2
Query: 2 NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 181
+HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 15 SHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 74
Query: 182 IKNGKKVTAFVPRDGCLNHIEENDE 256
IKNGKK+TAFVP DGCLN IEENDE
Sbjct: 75 IKNGKKITAFVPNDGCLNFIEENDE 99
Score = 67.3 bits (157), Expect = 2e-11
Identities = 33/39 (84%), Positives = 34/39 (87%)
Frame = +1
Query: 256 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLSLSTKRKR 372
VLVAGFGRKGHAVGDIPGVRFKVVKVANVSL K K+
Sbjct: 100 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKK 138
>CR456996-1|CAG33277.1| 143|Homo sapiens RPS23 protein.
Length = 143
Score = 164 bits (398), Expect = 1e-40
Identities = 73/85 (85%), Positives = 80/85 (94%)
Frame = +2
Query: 2 NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 181
+HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 15 SHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 74
Query: 182 IKNGKKVTAFVPRDGCLNHIEENDE 256
IKNGKK+TAFVP DGCLN IEENDE
Sbjct: 75 IKNGKKITAFVPNDGCLNFIEENDE 99
Score = 67.3 bits (157), Expect = 2e-11
Identities = 33/39 (84%), Positives = 34/39 (87%)
Frame = +1
Query: 256 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLSLSTKRKR 372
VLVAGFGRKGHAVGDIPGVRFKVVKVANVSL K K+
Sbjct: 100 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKK 138
>BC070221-1|AAH70221.1| 143|Homo sapiens ribosomal protein S23
protein.
Length = 143
Score = 164 bits (398), Expect = 1e-40
Identities = 73/85 (85%), Positives = 80/85 (94%)
Frame = +2
Query: 2 NHRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 181
+HRR+Q+W DK++KKAH+GT KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL
Sbjct: 15 SHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 74
Query: 182 IKNGKKVTAFVPRDGCLNHIEENDE 256
IKNGKK+TAFVP DGCLN IEENDE
Sbjct: 75 IKNGKKITAFVPNDGCLNFIEENDE 99
Score = 67.3 bits (157), Expect = 2e-11
Identities = 33/39 (84%), Positives = 34/39 (87%)
Frame = +1
Query: 256 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLSLSTKRKR 372
VLVAGFGRKGHAVGDIPGVRFKVVKVANVSL K K+
Sbjct: 100 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKK 138
>AB007158-1|BAA25822.1| 59|Homo sapiens ribosomal protein S23
protein.
Length = 59
Score = 67.3 bits (157), Expect = 2e-11
Identities = 33/39 (84%), Positives = 34/39 (87%)
Frame = +1
Query: 256 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLSLSTKRKR 372
VLVAGFGRKGHAVGDIPGVRFKVVKVANVSL K K+
Sbjct: 17 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKK 55
Score = 35.5 bits (78), Expect = 0.084
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = +2
Query: 209 FVPRDGCLNHIEENDE 256
FVP DGCLN IEENDE
Sbjct: 1 FVPNDGCLNFIEENDE 16
>Y11681-2|CAA72377.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 precursor protein.
Length = 138
Score = 43.2 bits (97), Expect = 4e-04
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = +2
Query: 68 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDG 226
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG 99
>CR407609-1|CAG28537.1| 138|Homo sapiens MRPS12 protein.
Length = 138
Score = 43.2 bits (97), Expect = 4e-04
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = +2
Query: 68 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDG 226
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG 99
>BC007499-1|AAH07499.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 43.2 bits (97), Expect = 4e-04
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = +2
Query: 68 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDG 226
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG 99
>BC006424-1|AAH06424.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 43.2 bits (97), Expect = 4e-04
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = +2
Query: 68 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDG 226
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG 99
>BC001617-1|AAH01617.1| 138|Homo sapiens mitochondrial ribosomal
protein S12 protein.
Length = 138
Score = 43.2 bits (97), Expect = 4e-04
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = +2
Query: 68 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDG 226
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG 99
>AF058761-1|AAC64704.1| 138|Homo sapiens ribosomal protein S12
protein.
Length = 138
Score = 43.2 bits (97), Expect = 4e-04
Identities = 22/53 (41%), Positives = 30/53 (56%)
Frame = +2
Query: 68 KANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDG 226
K P G KG+VL + K+PNSA RKC RV+L G++ F+P +G
Sbjct: 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG 99
>AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein.
Length = 1332
Score = 29.9 bits (64), Expect = 4.2
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = +1
Query: 46 SPHGYEMEG*PFRWCISRKGHRPRESWCRS*AAQLCHPQMRPC 174
SPHG +M G P RP ES+C PQ RPC
Sbjct: 37 SPHGPDMSG-PLEGADGGGDPRPGESFCPGGVPSPGPPQHRPC 78
>AK098732-1|BAC05396.1| 166|Homo sapiens protein ( Homo sapiens
cDNA FLJ25866 fis, clone CBR01987. ).
Length = 166
Score = 29.1 bits (62), Expect = 7.3
Identities = 16/32 (50%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -1
Query: 278 RPNPATSTRRFLRC--GLGNRHGGRMRSLSFR 189
RP+P T R+ RC G G R G R RS S R
Sbjct: 88 RPHPGTGLRQTPRCTKGQGPRRGRRRRSASAR 119
>BC011396-1|AAH11396.2| 661|Homo sapiens pseudouridylate synthase 7
homolog (S. cerevisiae) protein.
Length = 661
Score = 28.7 bits (61), Expect = 9.7
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Frame = +2
Query: 77 PFGGASHAKGIVLEKVGVEAKQPNSAIRK-----CVRVQLI----KNGKK--VTAF--VP 217
P GA + + + K P +A+RK CV QL+ K G K V+AF +P
Sbjct: 409 PRSGAEKGYLVKCREEWAKTKDPTAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIP 468
Query: 218 RDGCLNHIEENDEY*WRDSVVK 283
R+ L +I Y W + V K
Sbjct: 469 RNNRLMYIHSYQSYVWNNMVSK 490
>BC005209-1|AAH05209.3| 311|Homo sapiens PUS7 protein protein.
Length = 311
Score = 28.7 bits (61), Expect = 9.7
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Frame = +2
Query: 77 PFGGASHAKGIVLEKVGVEAKQPNSAIRK-----CVRVQLI----KNGKK--VTAF--VP 217
P GA + + + K P +A+RK CV QL+ K G K V+AF +P
Sbjct: 59 PRSGAEKGYLVKCREEWAKTKDPTAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIP 118
Query: 218 RDGCLNHIEENDEY*WRDSVVK 283
R+ L +I Y W + V K
Sbjct: 119 RNNRLMYIHSYQSYVWNNMVSK 140
>AB067484-1|BAB67790.1| 645|Homo sapiens KIAA1897 protein protein.
Length = 645
Score = 28.7 bits (61), Expect = 9.7
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Frame = +2
Query: 77 PFGGASHAKGIVLEKVGVEAKQPNSAIRK-----CVRVQLI----KNGKK--VTAF--VP 217
P GA + + + K P +A+RK CV QL+ K G K V+AF +P
Sbjct: 393 PRSGAEKGYLVKCREEWAKTKDPTAALRKLPVKRCVEGQLLRGLSKYGMKNIVSAFGIIP 452
Query: 218 RDGCLNHIEENDEY*WRDSVVK 283
R+ L +I Y W + V K
Sbjct: 453 RNNRLMYIHSYQSYVWNNMVSK 474
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,334,870
Number of Sequences: 237096
Number of extensions: 1475452
Number of successful extensions: 3243
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3243
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3701294870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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