Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0870.Seq
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   167   2e-42
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    43   9e-05
AC024828-1|AAF60808.2|  419|Caenorhabditis elegans Hypothetical ...    28   3.6  
Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical pr...    27   4.8  
AF077536-1|AAK31411.2|  643|Caenorhabditis elegans Hypothetical ...    27   4.8  
AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    27   6.3  
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    27   6.3  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  167 bits (407), Expect = 2e-42
 Identities = 72/84 (85%), Positives = 80/84 (95%)
 Frame = +2

Query: 5   HRREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 184
           HR+EQRW DK +KKAH+GT+WK+NPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVRVQLI
Sbjct: 16  HRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLI 75

Query: 185 KNGKKVTAFVPRDGCLNHIEENDE 256
           KNGKK+TAFVP DGCLN +EENDE
Sbjct: 76  KNGKKITAFVPNDGCLNFVEENDE 99



 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 29/39 (74%), Positives = 32/39 (82%)
 Frame = +1

Query: 256 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLSLSTKRKR 372
           VLV+GFGR GHAVGDIPGVRFK+VKVAN SL    K K+
Sbjct: 100 VLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKK 138


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 43.2 bits (97), Expect = 9e-05
 Identities = 24/57 (42%), Positives = 36/57 (63%)
 Frame = +2

Query: 86  GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDE 256
           G SH KGIVL+ V    K+PNS  RKC  V+L   G +V A++P  G  ++++E+ +
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHSQ 125


>AC024828-1|AAF60808.2|  419|Caenorhabditis elegans Hypothetical
           protein Y55F3BL.1 protein.
          Length = 419

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
 Frame = +2

Query: 170 RVQLIKNGKKVTAFVPRDGCLNHIEENDEY*WRDSVVKVTPSVTFPEFVLRW*K*PTCLS 349
           R QLI +GK+++      G  N + E+D   W+ +   +     F EF       P    
Sbjct: 5   RAQLIADGKELSELDEEIGVTNAVREDD---WKKAAEDLDKKFKFGEFP------PKNEL 55

Query: 350 RSLQREKGATKIIGVHCDKCL--LSGSAL 430
           +S++RE    K++ +  ++C+  LSG+ L
Sbjct: 56  KSVEREL-QRKLVLITAERCIGELSGTDL 83


>Z81128-8|CAB03402.1|  811|Caenorhabditis elegans Hypothetical
           protein T23D8.9a protein.
          Length = 811

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = +2

Query: 203 TAFVPRDGCLNHIEEN 250
           T FVP+DG LN I+EN
Sbjct: 653 TPFVPKDGVLNVIDEN 668


>AF077536-1|AAK31411.2|  643|Caenorhabditis elegans Hypothetical
           protein C16A11.5 protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 344 LSRSLQREKGATKIIGVHCDKCL 412
           L + L  +K   +++G+HCD C+
Sbjct: 388 LKQFLHNQKACHRLVGLHCDLCI 410


>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 323 TLKRTPGMSPTA*PLRPNPATST 255
           T  RTP  +P A P RP P+ S+
Sbjct: 38  TTMRTPAATPAAPPTRPTPSRSS 60


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 323 TLKRTPGMSPTA*PLRPNPATST 255
           T  RTP  +P A P RP P+ S+
Sbjct: 167 TTMRTPAATPAAPPTRPTPSRSS 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,967,753
Number of Sequences: 27780
Number of extensions: 222335
Number of successful extensions: 478
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)