Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0870.Seq
         (449 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   1.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   1.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   1.5  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   2.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   2.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   2.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.6  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   4.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.2  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 283 GHAVGDIPGVR 315
           GH V D+PGVR
Sbjct: 69  GHPVNDVPGVR 79


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 283 GHAVGDIPGVR 315
           GH V D+PGVR
Sbjct: 69  GHPVNDVPGVR 79


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 283 GHAVGDIPGVR 315
           G AVGD+PG+R
Sbjct: 42  GSAVGDVPGLR 52


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 84  PKGLAFHFVPMWAFLNSLSA 25
           PK +A H++  W FL+ +S+
Sbjct: 157 PKLIAKHYLRTWFFLDLISS 176


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 84  PKGLAFHFVPMWAFLNSLSA 25
           PK +A H++  W FL+ +S+
Sbjct: 157 PKLIAKHYLRTWFFLDLISS 176


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -3

Query: 84  PKGLAFHFVPMWAFLNSLSA 25
           PK +A H++  W FL+ +S+
Sbjct: 157 PKLIAKHYLRTWFFLDLISS 176


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +2

Query: 143 PNSAIRKCV 169
           PNSA+RKC+
Sbjct: 584 PNSAVRKCM 592


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 92  SHAKGIVLEKVGVEAKQPNSAIR 160
           +H K +VLE+   ++K P S  R
Sbjct: 73  THEKKLVLERSKTKSKSPESRDR 95


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.6 bits (41), Expect = 8.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 438 TYNNALPDSRHLSQCTPMILVA 373
           TYN A  D +H+ Q     LVA
Sbjct: 180 TYNGAQVDLKHMKQEAGSNLVA 201


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,646
Number of Sequences: 438
Number of extensions: 2751
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)