BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0870.Seq (449 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 23 1.2 AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 23 1.2 AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 23 1.5 AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-act... 22 2.7 AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 22 2.7 AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 22 2.7 AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 22 3.6 AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex det... 21 4.7 AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 21 8.2 >AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule AbsCAM-Ig7B protein. Length = 1923 Score = 23.4 bits (48), Expect = 1.2 Identities = 8/11 (72%), Positives = 9/11 (81%) Frame = +1 Query: 283 GHAVGDIPGVR 315 GH V D+PGVR Sbjct: 69 GHPVNDVPGVR 79 >AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member AbsCAM-Ig7A protein. Length = 1919 Score = 23.4 bits (48), Expect = 1.2 Identities = 8/11 (72%), Positives = 9/11 (81%) Frame = +1 Query: 283 GHAVGDIPGVR 315 GH V D+PGVR Sbjct: 69 GHPVNDVPGVR 79 >AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. Length = 1946 Score = 23.0 bits (47), Expect = 1.5 Identities = 8/11 (72%), Positives = 10/11 (90%) Frame = +1 Query: 283 GHAVGDIPGVR 315 G AVGD+PG+R Sbjct: 42 GSAVGDVPGLR 52 >AY739659-1|AAU85298.1| 288|Apis mellifera hyperpolarization-activated ion channelvariant T protein. Length = 288 Score = 22.2 bits (45), Expect = 2.7 Identities = 8/20 (40%), Positives = 14/20 (70%) Frame = -3 Query: 84 PKGLAFHFVPMWAFLNSLSA 25 PK +A H++ W FL+ +S+ Sbjct: 157 PKLIAKHYLRTWFFLDLISS 176 >AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-activated ion channelvariant L protein. Length = 664 Score = 22.2 bits (45), Expect = 2.7 Identities = 8/20 (40%), Positives = 14/20 (70%) Frame = -3 Query: 84 PKGLAFHFVPMWAFLNSLSA 25 PK +A H++ W FL+ +S+ Sbjct: 157 PKLIAKHYLRTWFFLDLISS 176 >AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-activated ion channel protein. Length = 632 Score = 22.2 bits (45), Expect = 2.7 Identities = 8/20 (40%), Positives = 14/20 (70%) Frame = -3 Query: 84 PKGLAFHFVPMWAFLNSLSA 25 PK +A H++ W FL+ +S+ Sbjct: 157 PKLIAKHYLRTWFFLDLISS 176 >AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein protein. Length = 1124 Score = 21.8 bits (44), Expect = 3.6 Identities = 7/9 (77%), Positives = 9/9 (100%) Frame = +2 Query: 143 PNSAIRKCV 169 PNSA+RKC+ Sbjct: 584 PNSAVRKCM 592 >AY352277-1|AAQ67418.1| 418|Apis mellifera complementary sex determiner protein. Length = 418 Score = 21.4 bits (43), Expect = 4.7 Identities = 9/23 (39%), Positives = 14/23 (60%) Frame = +2 Query: 92 SHAKGIVLEKVGVEAKQPNSAIR 160 +H K +VLE+ ++K P S R Sbjct: 73 THEKKLVLERSKTKSKSPESRDR 95 >AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic acetylcholine receptoralpha-3 protein. Length = 537 Score = 20.6 bits (41), Expect = 8.2 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = -3 Query: 438 TYNNALPDSRHLSQCTPMILVA 373 TYN A D +H+ Q LVA Sbjct: 180 TYNGAQVDLKHMKQEAGSNLVA 201 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 132,646 Number of Sequences: 438 Number of extensions: 2751 Number of successful extensions: 9 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 9 length of database: 146,343 effective HSP length: 53 effective length of database: 123,129 effective search space used: 11820384 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 40 (21.2 bits)
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