SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0870.Seq
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo...   147   3e-36
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi...   138   1e-33
At5g07000.1 68418.m00793 sulfotransferase family protein similar...    29   1.9  
At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial fam...    28   2.5  
At1g32960.1 68414.m04059 subtilase family protein contains simil...    28   3.4  
At1g32940.1 68414.m04057 subtilase family protein contains simil...    28   3.4  
At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UD...    27   4.4  
At1g59560.1 68414.m06698 expressed protein contains similarity t...    27   4.4  
At3g31310.1 68416.m03983 hypothetical protein                          27   5.9  
At4g26420.1 68417.m03802 S-adenosyl-L-methionine:carboxyl methyl...    27   7.7  
At4g10550.1 68417.m01727 subtilase family protein contains simil...    27   7.7  

>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
           ribosomal protein S23, Fragaria x ananassa, PIR:S56673
          Length = 142

 Score =  147 bits (357), Expect = 3e-36
 Identities = 64/83 (77%), Positives = 74/83 (89%)
 Frame = +2

Query: 8   RREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 187
           R  QRWADK++KK+H+G +WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIK
Sbjct: 17  RINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 75

Query: 188 NGKKVTAFVPRDGCLNHIEENDE 256
           NGKK+ AFVP DGCLN+IEENDE
Sbjct: 76  NGKKIAAFVPNDGCLNYIEENDE 98



 Score = 64.1 bits (149), Expect = 4e-11
 Identities = 30/39 (76%), Positives = 33/39 (84%)
 Frame = +1

Query: 256 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLSLSTKRKR 372
           VL+AGFGRKGHAVGDIPGVRFKVVKV+ VSL    K K+
Sbjct: 99  VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137



 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/13 (84%), Positives = 13/13 (100%)
 Frame = +3

Query: 348 LALYKEKKERPRS 386
           LAL+KEKKE+PRS
Sbjct: 130 LALFKEKKEKPRS 142


>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
           to 40S ribosomal protein S23 (S12) GB:P46297 from
           [Fragaria x ananassa]
          Length = 142

 Score =  138 bits (335), Expect = 1e-33
 Identities = 62/83 (74%), Positives = 71/83 (85%)
 Frame = +2

Query: 8   RREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 187
           R  QRWADK +KK++ G +WK  PF  +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIK
Sbjct: 17  RITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 75

Query: 188 NGKKVTAFVPRDGCLNHIEENDE 256
           NGKK+ AFVP DGCLN+IEENDE
Sbjct: 76  NGKKIAAFVPNDGCLNYIEENDE 98



 Score = 64.1 bits (149), Expect = 4e-11
 Identities = 30/39 (76%), Positives = 33/39 (84%)
 Frame = +1

Query: 256 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLSLSTKRKR 372
           VL+AGFGRKGHAVGDIPGVRFKVVKV+ VSL    K K+
Sbjct: 99  VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137



 Score = 27.5 bits (58), Expect = 4.4
 Identities = 11/13 (84%), Positives = 13/13 (100%)
 Frame = +3

Query: 348 LALYKEKKERPRS 386
           LAL+KEKKE+PRS
Sbjct: 130 LALFKEKKEKPRS 142


>At5g07000.1 68418.m00793 sulfotransferase family protein similar to
           steroid sulfotransferase 3 [Brassica napus] GI:3420008,
           steroid sulfotransferase 1 [Brassica napus] GI:3420004;
           contains Pfam profile PF00685: Sulfotransferase domain
          Length = 347

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = -3

Query: 288 VTFTTESRH*YSSFSSMWFRQPSRGTNAVTFFPFLMSCTRTHLRMAELGCLASTPTFSRT 109
           +TFT  +RH +   SS     P   +N     PF       +  + +L  LAS  TF+  
Sbjct: 96  LTFTILTRHRFDPVSSSSSDHPLLTSNPHDLVPFFEYKLYANGNVPDLSGLASPRTFATH 155

Query: 108 MPF 100
           +PF
Sbjct: 156 VPF 158


>At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial family
           protein
          Length = 125

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 19/54 (35%), Positives = 30/54 (55%)
 Frame = +2

Query: 137 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEY*WRDSVVKVTPSV 298
           K+PNSA RK  +V+L  N   + A +P +G  ++ +E+     R   VK +P V
Sbjct: 43  KKPNSAPRKIAKVRL-SNRHDIFAHIPGEG--HNSQEHSTVLIRGGRVKDSPGV 93


>At1g32960.1 68414.m04059 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 [Oryza sativa]
          Length = 777

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 23  WADKEFKKAHMGTKWKANPFGGASHAKG 106
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 575 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 602


>At1g32940.1 68414.m04057 subtilase family protein contains
           similarity to subtilase; SP1 GI:9957714 from [Oryza
           sativa]
          Length = 774

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 23  WADKEFKKAHMGTKWKANPFGGASHAKG 106
           W+   F+ A + T W+ +PFG    A+G
Sbjct: 572 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 599


>At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UDP
           glucosyltransferase, putative similar to sucrose
           synthase GI:6682841 from [Citrus unshiu]
          Length = 942

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -3

Query: 408 HLSQCTPMILVAPFSLCRERERHVGYFYHLKTNSGNVT-DGVTFTTESRH*YSSFSSMW 235
           ++  CT    V P  +      + G++ ++K NSG++T D +T T   +   S F   W
Sbjct: 74  YILTCTQEAAVVPPFVALAARPNPGFWEYVKVNSGDLTVDEITATDYLKLKESVFDESW 132


>At1g59560.1 68414.m06698 expressed protein contains similarity to
           apoptosis inhibitors
          Length = 338

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = -3

Query: 435 YNNALPDSRHLSQCTPMIL-VAPFSLCRERERHVGYFY 325
           YN A  +  H+  CTP  L +    LCRER + V   Y
Sbjct: 299 YNTAFVECGHMCCCTPCSLQLRTCPLCRERIQQVLKIY 336


>At3g31310.1 68416.m03983 hypothetical protein
          Length = 291

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
 Frame = +2

Query: 89  ASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEY*WR 268
           A  A   + E++    +  + AI K    +L+K   K  A V +D  +   + N     R
Sbjct: 220 ADTASHFLRERLVAAERARDEAISKAAEAKLVKEKTKEKAIVNKDNSVKLAQNNRAIGLR 279

Query: 269 DS-VVKVT 289
           DS V +VT
Sbjct: 280 DSEVARVT 287


>At4g26420.1 68417.m03802 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to caffeine
           synthase [Camellia sinensis][GI:9967143],
           defense-related protein cjs1 [Brassica
           carinata][GI:14009292],
           S-adenosyl-L-methionine:salicylic acid carboxyl
           methyltransferase [Clarkia breweri][GI:6002712]
          Length = 619

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 213 TNAVTFFPFLMSCTRTHLRMAELGCLASTPTFS 115
           T A+        C+ +HL++A+LGC     TFS
Sbjct: 41  TTAINSIKLTEGCS-SHLKIADLGCAIGDNTFS 72


>At4g10550.1 68417.m01727 subtilase family protein contains
           similarity to subtilisin-like protease AIR3 GI:4218991
           from [Arabidopsis thaliana]
          Length = 778

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 23  WADKEFKKAHMGTKWKANPFGGASHAKG 106
           W+    + A + T WK +PFG    A+G
Sbjct: 576 WSPAAIRSAIVTTAWKTDPFGEQIFAEG 603


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,444,318
Number of Sequences: 28952
Number of extensions: 210530
Number of successful extensions: 482
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -