Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0870.Seq
(449 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo... 147 3e-36
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi... 138 1e-33
At5g07000.1 68418.m00793 sulfotransferase family protein similar... 29 1.9
At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial fam... 28 2.5
At1g32960.1 68414.m04059 subtilase family protein contains simil... 28 3.4
At1g32940.1 68414.m04057 subtilase family protein contains simil... 28 3.4
At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UD... 27 4.4
At1g59560.1 68414.m06698 expressed protein contains similarity t... 27 4.4
At3g31310.1 68416.m03983 hypothetical protein 27 5.9
At4g26420.1 68417.m03802 S-adenosyl-L-methionine:carboxyl methyl... 27 7.7
At4g10550.1 68417.m01727 subtilase family protein contains simil... 27 7.7
>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
ribosomal protein S23, Fragaria x ananassa, PIR:S56673
Length = 142
Score = 147 bits (357), Expect = 3e-36
Identities = 64/83 (77%), Positives = 74/83 (89%)
Frame = +2
Query: 8 RREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 187
R QRWADK++KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIK
Sbjct: 17 RINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 75
Query: 188 NGKKVTAFVPRDGCLNHIEENDE 256
NGKK+ AFVP DGCLN+IEENDE
Sbjct: 76 NGKKIAAFVPNDGCLNYIEENDE 98
Score = 64.1 bits (149), Expect = 4e-11
Identities = 30/39 (76%), Positives = 33/39 (84%)
Frame = +1
Query: 256 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLSLSTKRKR 372
VL+AGFGRKGHAVGDIPGVRFKVVKV+ VSL K K+
Sbjct: 99 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +3
Query: 348 LALYKEKKERPRS 386
LAL+KEKKE+PRS
Sbjct: 130 LALFKEKKEKPRS 142
>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
to 40S ribosomal protein S23 (S12) GB:P46297 from
[Fragaria x ananassa]
Length = 142
Score = 138 bits (335), Expect = 1e-33
Identities = 62/83 (74%), Positives = 71/83 (85%)
Frame = +2
Query: 8 RREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 187
R QRWADK +KK++ G +WK PF +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIK
Sbjct: 17 RITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 75
Query: 188 NGKKVTAFVPRDGCLNHIEENDE 256
NGKK+ AFVP DGCLN+IEENDE
Sbjct: 76 NGKKIAAFVPNDGCLNYIEENDE 98
Score = 64.1 bits (149), Expect = 4e-11
Identities = 30/39 (76%), Positives = 33/39 (84%)
Frame = +1
Query: 256 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLSLSTKRKR 372
VL+AGFGRKGHAVGDIPGVRFKVVKV+ VSL K K+
Sbjct: 99 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137
Score = 27.5 bits (58), Expect = 4.4
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +3
Query: 348 LALYKEKKERPRS 386
LAL+KEKKE+PRS
Sbjct: 130 LALFKEKKEKPRS 142
>At5g07000.1 68418.m00793 sulfotransferase family protein similar to
steroid sulfotransferase 3 [Brassica napus] GI:3420008,
steroid sulfotransferase 1 [Brassica napus] GI:3420004;
contains Pfam profile PF00685: Sulfotransferase domain
Length = 347
Score = 28.7 bits (61), Expect = 1.9
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -3
Query: 288 VTFTTESRH*YSSFSSMWFRQPSRGTNAVTFFPFLMSCTRTHLRMAELGCLASTPTFSRT 109
+TFT +RH + SS P +N PF + + +L LAS TF+
Sbjct: 96 LTFTILTRHRFDPVSSSSSDHPLLTSNPHDLVPFFEYKLYANGNVPDLSGLASPRTFATH 155
Query: 108 MPF 100
+PF
Sbjct: 156 VPF 158
>At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial family
protein
Length = 125
Score = 28.3 bits (60), Expect = 2.5
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +2
Query: 137 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEY*WRDSVVKVTPSV 298
K+PNSA RK +V+L N + A +P +G ++ +E+ R VK +P V
Sbjct: 43 KKPNSAPRKIAKVRL-SNRHDIFAHIPGEG--HNSQEHSTVLIRGGRVKDSPGV 93
>At1g32960.1 68414.m04059 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 [Oryza sativa]
Length = 777
Score = 27.9 bits (59), Expect = 3.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 23 WADKEFKKAHMGTKWKANPFGGASHAKG 106
W+ F+ A + T W+ +PFG A+G
Sbjct: 575 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 602
>At1g32940.1 68414.m04057 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]
Length = 774
Score = 27.9 bits (59), Expect = 3.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 23 WADKEFKKAHMGTKWKANPFGGASHAKG 106
W+ F+ A + T W+ +PFG A+G
Sbjct: 572 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 599
>At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UDP
glucosyltransferase, putative similar to sucrose
synthase GI:6682841 from [Citrus unshiu]
Length = 942
Score = 27.5 bits (58), Expect = 4.4
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -3
Query: 408 HLSQCTPMILVAPFSLCRERERHVGYFYHLKTNSGNVT-DGVTFTTESRH*YSSFSSMW 235
++ CT V P + + G++ ++K NSG++T D +T T + S F W
Sbjct: 74 YILTCTQEAAVVPPFVALAARPNPGFWEYVKVNSGDLTVDEITATDYLKLKESVFDESW 132
>At1g59560.1 68414.m06698 expressed protein contains similarity to
apoptosis inhibitors
Length = 338
Score = 27.5 bits (58), Expect = 4.4
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = -3
Query: 435 YNNALPDSRHLSQCTPMIL-VAPFSLCRERERHVGYFY 325
YN A + H+ CTP L + LCRER + V Y
Sbjct: 299 YNTAFVECGHMCCCTPCSLQLRTCPLCRERIQQVLKIY 336
>At3g31310.1 68416.m03983 hypothetical protein
Length = 291
Score = 27.1 bits (57), Expect = 5.9
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +2
Query: 89 ASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEY*WR 268
A A + E++ + + AI K +L+K K A V +D + + N R
Sbjct: 220 ADTASHFLRERLVAAERARDEAISKAAEAKLVKEKTKEKAIVNKDNSVKLAQNNRAIGLR 279
Query: 269 DS-VVKVT 289
DS V +VT
Sbjct: 280 DSEVARVT 287
>At4g26420.1 68417.m03802 S-adenosyl-L-methionine:carboxyl
methyltransferase family protein similar to caffeine
synthase [Camellia sinensis][GI:9967143],
defense-related protein cjs1 [Brassica
carinata][GI:14009292],
S-adenosyl-L-methionine:salicylic acid carboxyl
methyltransferase [Clarkia breweri][GI:6002712]
Length = 619
Score = 26.6 bits (56), Expect = 7.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 213 TNAVTFFPFLMSCTRTHLRMAELGCLASTPTFS 115
T A+ C+ +HL++A+LGC TFS
Sbjct: 41 TTAINSIKLTEGCS-SHLKIADLGCAIGDNTFS 72
>At4g10550.1 68417.m01727 subtilase family protein contains
similarity to subtilisin-like protease AIR3 GI:4218991
from [Arabidopsis thaliana]
Length = 778
Score = 26.6 bits (56), Expect = 7.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 23 WADKEFKKAHMGTKWKANPFGGASHAKG 106
W+ + A + T WK +PFG A+G
Sbjct: 576 WSPAAIRSAIVTTAWKTDPFGEQIFAEG 603
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,444,318
Number of Sequences: 28952
Number of extensions: 210530
Number of successful extensions: 482
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 480
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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