BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0870.Seq (449 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo... 147 3e-36 At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi... 138 1e-33 At5g07000.1 68418.m00793 sulfotransferase family protein similar... 29 1.9 At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial fam... 28 2.5 At1g32960.1 68414.m04059 subtilase family protein contains simil... 28 3.4 At1g32940.1 68414.m04057 subtilase family protein contains simil... 28 3.4 At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UD... 27 4.4 At1g59560.1 68414.m06698 expressed protein contains similarity t... 27 4.4 At3g31310.1 68416.m03983 hypothetical protein 27 5.9 At4g26420.1 68417.m03802 S-adenosyl-L-methionine:carboxyl methyl... 27 7.7 At4g10550.1 68417.m01727 subtilase family protein contains simil... 27 7.7 >At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribosomal protein S23, Fragaria x ananassa, PIR:S56673 Length = 142 Score = 147 bits (357), Expect = 3e-36 Identities = 64/83 (77%), Positives = 74/83 (89%) Frame = +2 Query: 8 RREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 187 R QRWADK++KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIK Sbjct: 17 RINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 75 Query: 188 NGKKVTAFVPRDGCLNHIEENDE 256 NGKK+ AFVP DGCLN+IEENDE Sbjct: 76 NGKKIAAFVPNDGCLNYIEENDE 98 Score = 64.1 bits (149), Expect = 4e-11 Identities = 30/39 (76%), Positives = 33/39 (84%) Frame = +1 Query: 256 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLSLSTKRKR 372 VL+AGFGRKGHAVGDIPGVRFKVVKV+ VSL K K+ Sbjct: 99 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137 Score = 27.5 bits (58), Expect = 4.4 Identities = 11/13 (84%), Positives = 13/13 (100%) Frame = +3 Query: 348 LALYKEKKERPRS 386 LAL+KEKKE+PRS Sbjct: 130 LALFKEKKEKPRS 142 >At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar to 40S ribosomal protein S23 (S12) GB:P46297 from [Fragaria x ananassa] Length = 142 Score = 138 bits (335), Expect = 1e-33 Identities = 62/83 (74%), Positives = 71/83 (85%) Frame = +2 Query: 8 RREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIK 187 R QRWADK +KK++ G +WK PF +SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIK Sbjct: 17 RITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIK 75 Query: 188 NGKKVTAFVPRDGCLNHIEENDE 256 NGKK+ AFVP DGCLN+IEENDE Sbjct: 76 NGKKIAAFVPNDGCLNYIEENDE 98 Score = 64.1 bits (149), Expect = 4e-11 Identities = 30/39 (76%), Positives = 33/39 (84%) Frame = +1 Query: 256 VLVAGFGRKGHAVGDIPGVRFKVVKVANVSLSLSTKRKR 372 VL+AGFGRKGHAVGDIPGVRFKVVKV+ VSL K K+ Sbjct: 99 VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKK 137 Score = 27.5 bits (58), Expect = 4.4 Identities = 11/13 (84%), Positives = 13/13 (100%) Frame = +3 Query: 348 LALYKEKKERPRS 386 LAL+KEKKE+PRS Sbjct: 130 LALFKEKKEKPRS 142 >At5g07000.1 68418.m00793 sulfotransferase family protein similar to steroid sulfotransferase 3 [Brassica napus] GI:3420008, steroid sulfotransferase 1 [Brassica napus] GI:3420004; contains Pfam profile PF00685: Sulfotransferase domain Length = 347 Score = 28.7 bits (61), Expect = 1.9 Identities = 19/63 (30%), Positives = 28/63 (44%) Frame = -3 Query: 288 VTFTTESRH*YSSFSSMWFRQPSRGTNAVTFFPFLMSCTRTHLRMAELGCLASTPTFSRT 109 +TFT +RH + SS P +N PF + + +L LAS TF+ Sbjct: 96 LTFTILTRHRFDPVSSSSSDHPLLTSNPHDLVPFFEYKLYANGNVPDLSGLASPRTFATH 155 Query: 108 MPF 100 +PF Sbjct: 156 VPF 158 >At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial family protein Length = 125 Score = 28.3 bits (60), Expect = 2.5 Identities = 19/54 (35%), Positives = 30/54 (55%) Frame = +2 Query: 137 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEY*WRDSVVKVTPSV 298 K+PNSA RK +V+L N + A +P +G ++ +E+ R VK +P V Sbjct: 43 KKPNSAPRKIAKVRL-SNRHDIFAHIPGEG--HNSQEHSTVLIRGGRVKDSPGV 93 >At1g32960.1 68414.m04059 subtilase family protein contains similarity to subtilase; SP1 GI:9957714 [Oryza sativa] Length = 777 Score = 27.9 bits (59), Expect = 3.4 Identities = 10/28 (35%), Positives = 16/28 (57%) Frame = +2 Query: 23 WADKEFKKAHMGTKWKANPFGGASHAKG 106 W+ F+ A + T W+ +PFG A+G Sbjct: 575 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 602 >At1g32940.1 68414.m04057 subtilase family protein contains similarity to subtilase; SP1 GI:9957714 from [Oryza sativa] Length = 774 Score = 27.9 bits (59), Expect = 3.4 Identities = 10/28 (35%), Positives = 16/28 (57%) Frame = +2 Query: 23 WADKEFKKAHMGTKWKANPFGGASHAKG 106 W+ F+ A + T W+ +PFG A+G Sbjct: 572 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 599 >At1g73370.1 68414.m08492 sucrose synthase, putative / sucrose-UDP glucosyltransferase, putative similar to sucrose synthase GI:6682841 from [Citrus unshiu] Length = 942 Score = 27.5 bits (58), Expect = 4.4 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = -3 Query: 408 HLSQCTPMILVAPFSLCRERERHVGYFYHLKTNSGNVT-DGVTFTTESRH*YSSFSSMW 235 ++ CT V P + + G++ ++K NSG++T D +T T + S F W Sbjct: 74 YILTCTQEAAVVPPFVALAARPNPGFWEYVKVNSGDLTVDEITATDYLKLKESVFDESW 132 >At1g59560.1 68414.m06698 expressed protein contains similarity to apoptosis inhibitors Length = 338 Score = 27.5 bits (58), Expect = 4.4 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%) Frame = -3 Query: 435 YNNALPDSRHLSQCTPMIL-VAPFSLCRERERHVGYFY 325 YN A + H+ CTP L + LCRER + V Y Sbjct: 299 YNTAFVECGHMCCCTPCSLQLRTCPLCRERIQQVLKIY 336 >At3g31310.1 68416.m03983 hypothetical protein Length = 291 Score = 27.1 bits (57), Expect = 5.9 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Frame = +2 Query: 89 ASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEY*WR 268 A A + E++ + + AI K +L+K K A V +D + + N R Sbjct: 220 ADTASHFLRERLVAAERARDEAISKAAEAKLVKEKTKEKAIVNKDNSVKLAQNNRAIGLR 279 Query: 269 DS-VVKVT 289 DS V +VT Sbjct: 280 DSEVARVT 287 >At4g26420.1 68417.m03802 S-adenosyl-L-methionine:carboxyl methyltransferase family protein similar to caffeine synthase [Camellia sinensis][GI:9967143], defense-related protein cjs1 [Brassica carinata][GI:14009292], S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase [Clarkia breweri][GI:6002712] Length = 619 Score = 26.6 bits (56), Expect = 7.7 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = -3 Query: 213 TNAVTFFPFLMSCTRTHLRMAELGCLASTPTFS 115 T A+ C+ +HL++A+LGC TFS Sbjct: 41 TTAINSIKLTEGCS-SHLKIADLGCAIGDNTFS 72 >At4g10550.1 68417.m01727 subtilase family protein contains similarity to subtilisin-like protease AIR3 GI:4218991 from [Arabidopsis thaliana] Length = 778 Score = 26.6 bits (56), Expect = 7.7 Identities = 10/28 (35%), Positives = 15/28 (53%) Frame = +2 Query: 23 WADKEFKKAHMGTKWKANPFGGASHAKG 106 W+ + A + T WK +PFG A+G Sbjct: 576 WSPAAIRSAIVTTAWKTDPFGEQIFAEG 603 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,444,318 Number of Sequences: 28952 Number of extensions: 210530 Number of successful extensions: 482 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 467 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 480 length of database: 12,070,560 effective HSP length: 75 effective length of database: 9,899,160 effective search space used: 732537840 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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