Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0869.Seq
         (499 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q05FP4 Cluster: Putative uncharacterized protein; n=1; ...    32   6.2  
UniRef50_A0Q371 Cluster: Methyl-accepting chemotaxis protein; n=...    32   8.2  

>UniRef50_Q05FP4 Cluster: Putative uncharacterized protein; n=1;
           Candidatus Carsonella ruddii PV|Rep: Putative
           uncharacterized protein - Carsonella ruddii (strain PV)
          Length = 426

 Score = 32.3 bits (70), Expect = 6.2
 Identities = 21/90 (23%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
 Frame = +3

Query: 9   YFVSDVKMNNFILII*NTPVTIYYGH------CAFFFSNLQSVKGMNFFDIY*MLLNINY 170
           Y ++++K     + +    V  YY          F  S ++++K +NF     +  N N+
Sbjct: 176 YIINNIKKKTTEITLLGQNVNSYYNKNVNFNSLIFNISKIKNIKRINFLSSNIIDFNKNF 235

Query: 171 FTLYKNIWK---H*HFGIMNWISLVVYELH 251
           + LYKN+ K   H H  I +  +L++ +++
Sbjct: 236 YNLYKNVKKISNHIHLPIQSGSNLILKKMN 265


>UniRef50_A0Q371 Cluster: Methyl-accepting chemotaxis protein; n=1;
           Clostridium novyi NT|Rep: Methyl-accepting chemotaxis
           protein - Clostridium novyi (strain NT)
          Length = 634

 Score = 31.9 bits (69), Expect = 8.2
 Identities = 14/47 (29%), Positives = 29/47 (61%)
 Frame = +3

Query: 3   IYYFVSDVKMNNFILII*NTPVTIYYGHCAFFFSNLQSVKGMNFFDI 143
           +YY + ++K+N  I+ I N  + +Y+    F F++++  K +N +DI
Sbjct: 21  LYYLIPNIKINGVIIAIVNI-LILYFAKRTFNFNDVKLDKHLNKYDI 66


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 381,022,773
Number of Sequences: 1657284
Number of extensions: 6108585
Number of successful extensions: 8617
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8616
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)