Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0869.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    30   0.17 
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    29   0.39 
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      25   8.4  
SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|...    25   8.4  

>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +3

Query: 57  NTPVTIYYGHCAFFFSNLQSVKGMNFF 137
           NT V  YYGHC     N++S+K +NF+
Sbjct: 658 NTHVKSYYGHC-----NVESIKNVNFY 679


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +3

Query: 57  NTPVTIYYGHCAFFFSNLQSVKGMNFFDIY*MLLNINY 170
           N P T+Y+G CA    NL +V    F D + ++LN+N+
Sbjct: 525 NLP-TLYHGSCALLTDNLVTV----FLDAHDLVLNLNF 557


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 305 FFFYLNIFSIFS*LCT 258
           FFFY ++FS FS L T
Sbjct: 110 FFFYFSLFSFFSFLFT 125


>SPBC11B10.07c |||CDC50 domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 57  NTPVTIYYGHCAFFFSNLQSVKGMNFF 137
           N PVT Y G     FS    + G N+F
Sbjct: 301 NFPVTEYKGTKTIMFSTTSVIGGKNYF 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,713,081
Number of Sequences: 5004
Number of extensions: 30250
Number of successful extensions: 38
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)