Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0869.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83229-2|CAB05739.1| 1589|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AL021497-2|CAA16400.1|  606|Caenorhabditis elegans Hypothetical ...    27   7.6  
AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4 ho...    27   10.0 
AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4 ho...    27   10.0 

>Z83229-2|CAB05739.1| 1589|Caenorhabditis elegans Hypothetical protein
            F54F11.2 protein.
          Length = 1589

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 96   FFSNLQSVKGMNFFDIY*MLLNINYFTLYKNI 191
            ++S L      NF+DIY  L+  N F  Y  +
Sbjct: 1320 YYSTLVIADSDNFYDIYDKLIKFNIFVQYNQL 1351


>AL021497-2|CAA16400.1|  606|Caenorhabditis elegans Hypothetical
           protein Y51A2D.4 protein.
          Length = 606

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 233 QGNPVHNPKMSMFPYILV*CKII 165
           Q  P H PK+ +F YIL    +I
Sbjct: 12  QDKPAHTPKLGLFVYILAAASVI 34


>AF003145-6|AAK68678.1| 1420|Caenorhabditis elegans Mtk1/mekk4
           homolog protein 1, isoformb protein.
          Length = 1420

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 44  SNHLKYTSDHILWTLCVFFFKST 112
           S H +YT ++ILW +   +F +T
Sbjct: 213 SEHTRYTFENILWLILKSYFSTT 235


>AF003145-5|AAB57718.1| 1418|Caenorhabditis elegans Mtk1/mekk4
           homolog protein 1, isoforma protein.
          Length = 1418

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 44  SNHLKYTSDHILWTLCVFFFKST 112
           S H +YT ++ILW +   +F +T
Sbjct: 213 SEHTRYTFENILWLILKSYFSTT 235


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,166,978
Number of Sequences: 27780
Number of extensions: 159292
Number of successful extensions: 231
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)