Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0869.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   4.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   5.4  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   7.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   7.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.4  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 5/17 (29%), Positives = 11/17 (64%)
 Frame = +2

Query: 170 FYIIQEYMETLTFWDYE 220
           FY + E ++ +  WD++
Sbjct: 103 FYFVHESLKNVLLWDFQ 119


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = -3

Query: 239 DDQGNPVHNPKMSMFPYILV*CKIINI*EHLIDVKKIHSLNRL*I*KKKRTMSII 75
           +D GNP+   K S    IL   ++ N+ + +++V+    L  +   ++K+   I+
Sbjct: 366 NDSGNPILKAKPSEVVQILGWKELPNVGDEILEVENDKILQEVIKFRQKQRAEIL 420


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 21  DVKMNNFILII*NTPVTIYYGHCAFFFSNLQSVKG 125
           DVK+ N +L I N      +G C      L S+ G
Sbjct: 722 DVKLKNVLLDIENRAKLTDFGFCITEVMMLGSIVG 756


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 21  DVKMNNFILII*NTPVTIYYGHCAFFFSNLQSVKG 125
           DVK+ N +L I N      +G C      L S+ G
Sbjct: 760 DVKLKNVLLDIENRAKLTDFGFCITEVMMLGSIVG 794


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 172  LHYTRIYGNIDILGL 216
            LHY   +GN+D L L
Sbjct: 1439 LHYRTAHGNLDELQL 1453


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 172  LHYTRIYGNIDILGL 216
            LHY   +GN+D L L
Sbjct: 1435 LHYRTAHGNLDELQL 1449


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,724
Number of Sequences: 438
Number of extensions: 2025
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)