Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0868.Seq
         (499 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P68925 Cluster: Protein rexA; n=2; Enterobacteria phage...   177   9e-44
UniRef50_Q64752 Cluster: DNA terminal protein; n=6; Aviadenoviru...    33   2.7  
UniRef50_Q93HW0 Cluster: Endo-beta-N-acetylglucosaminidase D; n=...    32   6.2  

>UniRef50_P68925 Cluster: Protein rexA; n=2; Enterobacteria phage
           lambda|Rep: Protein rexA - Bacteriophage 434
          Length = 279

 Score =  177 bits (432), Expect = 9e-44
 Identities = 85/87 (97%), Positives = 85/87 (97%)
 Frame = -2

Query: 264 KI*RDIKKVAKDIIFNPSPQFSDISLRAKDEAGDILTEHYLSEKGHLSAPLNKVTNAEIA 85
           K  RDIKKVAKDIIFNPSPQFSDISLRAKDEAGDILTEHYLSEKGHLSAPLNKVTNAEIA
Sbjct: 193 KFKRDIKKVAKDIIFNPSPQFSDISLRAKDEAGDILTEHYLSEKGHLSAPLNKVTNAEIA 252

Query: 84  EEMAYCYARMKSDILECFKRQVGKVKD 4
           EEMAYCYARMKSDILECFKRQVGKVKD
Sbjct: 253 EEMAYCYARMKSDILECFKRQVGKVKD 279



 Score = 86.2 bits (204), Expect = 4e-16
 Identities = 44/67 (65%), Positives = 50/67 (74%)
 Frame = -3

Query: 377 TTVKVEAKLPVFGDILKVLGATDIEGELFDSLDIVIKPKFKGI*KRLPRILFLTRHLNFQ 198
           TTVKVEAKLPVFGDILKVLGATDIEGELFDSLDIVIKPKFK   K++ + +       F 
Sbjct: 155 TTVKVEAKLPVFGDILKVLGATDIEGELFDSLDIVIKPKFKRDIKKVAKDIIFNPSPQFS 214

Query: 197 TLACGQK 177
            ++   K
Sbjct: 215 DISLRAK 221



 Score = 33.5 bits (73), Expect = 2.7
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -1

Query: 415 TKDDVMHMHFIGR 377
           TKDDVMHMHFIGR
Sbjct: 142 TKDDVMHMHFIGR 154


>UniRef50_Q64752 Cluster: DNA terminal protein; n=6;
           Aviadenovirus|Rep: DNA terminal protein - Avian
           adenovirus gal1 (strain Phelps) (FAdV-1) (Fowl
           adenovirus 1)
          Length = 575

 Score = 33.5 bits (73), Expect = 2.7
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = -3

Query: 341 GDILKVLGATDIEGELFDSLDIVIKPKFKGI 249
           GDI +VL   ++  EL DS+DI  + KFKGI
Sbjct: 511 GDIEEVLKQLNLSEELIDSIDISFRIKFKGI 541


>UniRef50_Q93HW0 Cluster: Endo-beta-N-acetylglucosaminidase D; n=13;
            Streptococcus|Rep: Endo-beta-N-acetylglucosaminidase D -
            Streptococcus pneumoniae
          Length = 1646

 Score = 32.3 bits (70), Expect = 6.2
 Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = -2

Query: 252  DIKKVAKDIIFN-PSPQFSDISLRAKDEAGDILTEHYLSEKGHLSAPLNKVTNAEIA 85
            +++     +++N  SP+  +  L+A + A  +L +H +S +  ++  LNK+T A  A
Sbjct: 1229 EVEAAKNKVVYNFASPEVKEAFLKAIEAAEQVLKDHEISTQDQVNDRLNKLTEAHKA 1285


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 485,168,614
Number of Sequences: 1657284
Number of extensions: 9470805
Number of successful extensions: 20440
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20431
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 29273652170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)