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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0868.Seq
         (499 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    29   0.39 
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces...    27   1.6  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    27   2.1  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      26   2.7  
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc...    26   3.6  
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual             25   6.3  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   8.4  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    25   8.4  
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc...    25   8.4  
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    25   8.4  

>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 410 RRCYAYAFHRPTTVKVEAKLPVFGD 336
           R  YAY F RP+ ++  A +P+ G+
Sbjct: 32  RGIYAYGFERPSAIQQRAIMPILGE 56


>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = -2

Query: 84  EEMAYC---YARMKSDILECFKRQVGKVKD 4
           E+M++C   Y    +DILE ++R+ G VKD
Sbjct: 236 EKMSHCEIQYFDFNTDILESYERRRGDVKD 265


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
 Frame = -2

Query: 240 VAKDIIFNPSPQFSD-ISLRAKD--EAGDILTEHYLSEKGHLSAPLNKVTNAEIAEEMAY 70
           VA++ I+ P     D IS   +D  E+G+++ +   S    +   L+++   + A E  Y
Sbjct: 228 VAEEPIYEPPEDSEDGISEMNEDPSESGEMIEQVISSTMNDVLRILDRLPRVQ-ANESVY 286

Query: 69  CYARMKSDILE 37
            Y R+KS++ +
Sbjct: 287 AYNRLKSELTD 297


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -2

Query: 144 LSEKGHLSAPLNKVTNAEIAEEMAYCYARMKSDILECFKRQ 22
           L E  H +  +N+  +AE+  E    Y R+K    E  +RQ
Sbjct: 29  LQESEHRNDQINETVDAELTNECWKLYMRLKPSNEEVSRRQ 69


>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
           Uch2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 365 VEAKLPVFGDILKVLGATDIEGELFDSLDI 276
           +E+   VF D+++ LG  D+E +   SLD+
Sbjct: 6   IESDAGVFTDLIENLGVKDVEVDELYSLDV 35


>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 484

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
 Frame = -2

Query: 249 IKKVAKDIIFNPSPQFSDISLRAKDEAGDILTEHYLS-EKGHLSAPLNKVTNAEIAEEMA 73
           +KK A D I + S   S + +R    AG  + +  L      L   LNKVT  + A  + 
Sbjct: 18  LKKTA-DFIESKSSSSSSLEVRL---AGGWVRDKLLGLSSDDLDVTLNKVTGVDFANSIF 73

Query: 72  YCYARMKSDILECFKRQVGKV 10
                + SD +  +K  +GK+
Sbjct: 74  EYVHSLDSDSVIPYKDALGKL 94


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +2

Query: 392 HMHNIVFGGWQDYAS--CADVEKTS 460
           H+H++ F  WQ   S  C  +EK S
Sbjct: 141 HLHHLRFSDWQSLVSYCCQAIEKLS 165


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 439 AAGVVLPPTKDDVMHMHFIGRQR*R*KPSYLY 344
           A G    P K DV+  H + R     +PSY Y
Sbjct: 259 AQGCEFEPEKLDVLKRHIVNRMLATPRPSYPY 290


>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -3

Query: 326 VLGATDIEGELFDSLDIVIKPKFKGI*KRLPRILFLTRHLNF 201
           VL  TD++  LFD+ D+ I P  + +   L  + + T   +F
Sbjct: 256 VLWDTDVDVVLFDASDVTITPYVQQLASLLKNMHYYTDTASF 297


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -2

Query: 246 KKVAKDIIFNPSPQFSDISLRAKDEAGDILTEHYLSEKGHLSAPLNKVTNAEIAE 82
           K  + D   N +PQ +  S R  D+A D+L+ +  S K  +     +   A + E
Sbjct: 85  KNSSLDAFLNETPQTASYSARNIDDALDLLSLNNSSSKDKIDRHPERRFKAALTE 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,018,747
Number of Sequences: 5004
Number of extensions: 41108
Number of successful extensions: 94
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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