BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0868.Seq (499 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 29 0.39 SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 1.6 SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 27 2.1 SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 26 2.7 SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc... 26 3.6 SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual 25 6.3 SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 8.4 SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 25 8.4 SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc... 25 8.4 SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 25 8.4 >SPAC1006.07 |||translation initiation factor eIF4A|Schizosaccharomyces pombe|chr 1|||Manual Length = 392 Score = 29.1 bits (62), Expect = 0.39 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = -3 Query: 410 RRCYAYAFHRPTTVKVEAKLPVFGD 336 R YAY F RP+ ++ A +P+ G+ Sbjct: 32 RGIYAYGFERPSAIQQRAIMPILGE 56 >SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces pombe|chr 2|||Manual Length = 466 Score = 27.1 bits (57), Expect = 1.6 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 3/30 (10%) Frame = -2 Query: 84 EEMAYC---YARMKSDILECFKRQVGKVKD 4 E+M++C Y +DILE ++R+ G VKD Sbjct: 236 EKMSHCEIQYFDFNTDILESYERRRGDVKD 265 >SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pombe|chr 2|||Manual Length = 329 Score = 26.6 bits (56), Expect = 2.1 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 3/71 (4%) Frame = -2 Query: 240 VAKDIIFNPSPQFSD-ISLRAKD--EAGDILTEHYLSEKGHLSAPLNKVTNAEIAEEMAY 70 VA++ I+ P D IS +D E+G+++ + S + L+++ + A E Y Sbjct: 228 VAEEPIYEPPEDSEDGISEMNEDPSESGEMIEQVISSTMNDVLRILDRLPRVQ-ANESVY 286 Query: 69 CYARMKSDILE 37 Y R+KS++ + Sbjct: 287 AYNRLKSELTD 297 >SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual Length = 478 Score = 26.2 bits (55), Expect = 2.7 Identities = 13/41 (31%), Positives = 20/41 (48%) Frame = -2 Query: 144 LSEKGHLSAPLNKVTNAEIAEEMAYCYARMKSDILECFKRQ 22 L E H + +N+ +AE+ E Y R+K E +RQ Sbjct: 29 LQESEHRNDQINETVDAELTNECWKLYMRLKPSNEEVSRRQ 69 >SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosaccharomyces pombe|chr 2|||Manual Length = 300 Score = 25.8 bits (54), Expect = 3.6 Identities = 11/30 (36%), Positives = 19/30 (63%) Frame = -3 Query: 365 VEAKLPVFGDILKVLGATDIEGELFDSLDI 276 +E+ VF D+++ LG D+E + SLD+ Sbjct: 6 IESDAGVFTDLIENLGVKDVEVDELYSLDV 35 >SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual Length = 484 Score = 25.0 bits (52), Expect = 6.3 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Frame = -2 Query: 249 IKKVAKDIIFNPSPQFSDISLRAKDEAGDILTEHYLS-EKGHLSAPLNKVTNAEIAEEMA 73 +KK A D I + S S + +R AG + + L L LNKVT + A + Sbjct: 18 LKKTA-DFIESKSSSSSSLEVRL---AGGWVRDKLLGLSSDDLDVTLNKVTGVDFANSIF 73 Query: 72 YCYARMKSDILECFKRQVGKV 10 + SD + +K +GK+ Sbjct: 74 EYVHSLDSDSVIPYKDALGKL 94 >SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces pombe|chr 3|||Manual Length = 2812 Score = 24.6 bits (51), Expect = 8.4 Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%) Frame = +2 Query: 392 HMHNIVFGGWQDYAS--CADVEKTS 460 H+H++ F WQ S C +EK S Sbjct: 141 HLHHLRFSDWQSLVSYCCQAIEKLS 165 >SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosaccharomyces pombe|chr 3|||Manual Length = 574 Score = 24.6 bits (51), Expect = 8.4 Identities = 12/32 (37%), Positives = 15/32 (46%) Frame = -1 Query: 439 AAGVVLPPTKDDVMHMHFIGRQR*R*KPSYLY 344 A G P K DV+ H + R +PSY Y Sbjct: 259 AQGCEFEPEKLDVLKRHIVNRMLATPRPSYPY 290 >SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosaccharomyces pombe|chr 1|||Manual Length = 329 Score = 24.6 bits (51), Expect = 8.4 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = -3 Query: 326 VLGATDIEGELFDSLDIVIKPKFKGI*KRLPRILFLTRHLNF 201 VL TD++ LFD+ D+ I P + + L + + T +F Sbjct: 256 VLWDTDVDVVLFDASDVTITPYVQQLASLLKNMHYYTDTASF 297 >SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|||Manual Length = 207 Score = 24.6 bits (51), Expect = 8.4 Identities = 15/55 (27%), Positives = 25/55 (45%) Frame = -2 Query: 246 KKVAKDIIFNPSPQFSDISLRAKDEAGDILTEHYLSEKGHLSAPLNKVTNAEIAE 82 K + D N +PQ + S R D+A D+L+ + S K + + A + E Sbjct: 85 KNSSLDAFLNETPQTASYSARNIDDALDLLSLNNSSSKDKIDRHPERRFKAALTE 139 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,018,747 Number of Sequences: 5004 Number of extensions: 41108 Number of successful extensions: 94 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 90 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 94 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 196153982 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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