Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0868.Seq
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 29 0.39
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 1.6
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 27 2.1
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 26 2.7
SPBC409.06 |uch2||ubiquitin C-terminal hydrolase Uch2|Schizosacc... 26 3.6
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual 25 6.3
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 25 8.4
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac... 25 8.4
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc... 25 8.4
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 25 8.4
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 29.1 bits (62), Expect = 0.39
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -3
Query: 410 RRCYAYAFHRPTTVKVEAKLPVFGD 336
R YAY F RP+ ++ A +P+ G+
Sbjct: 32 RGIYAYGFERPSAIQQRAIMPILGE 56
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 1.6
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Frame = -2
Query: 84 EEMAYC---YARMKSDILECFKRQVGKVKD 4
E+M++C Y +DILE ++R+ G VKD
Sbjct: 236 EKMSHCEIQYFDFNTDILESYERRRGDVKD 265
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 26.6 bits (56), Expect = 2.1
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Frame = -2
Query: 240 VAKDIIFNPSPQFSD-ISLRAKD--EAGDILTEHYLSEKGHLSAPLNKVTNAEIAEEMAY 70
VA++ I+ P D IS +D E+G+++ + S + L+++ + A E Y
Sbjct: 228 VAEEPIYEPPEDSEDGISEMNEDPSESGEMIEQVISSTMNDVLRILDRLPRVQ-ANESVY 286
Query: 69 CYARMKSDILE 37
Y R+KS++ +
Sbjct: 287 AYNRLKSELTD 297
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 26.2 bits (55), Expect = 2.7
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 144 LSEKGHLSAPLNKVTNAEIAEEMAYCYARMKSDILECFKRQ 22
L E H + +N+ +AE+ E Y R+K E +RQ
Sbjct: 29 LQESEHRNDQINETVDAELTNECWKLYMRLKPSNEEVSRRQ 69
>SPBC409.06 |uch2||ubiquitin C-terminal hydrolase
Uch2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 25.8 bits (54), Expect = 3.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 365 VEAKLPVFGDILKVLGATDIEGELFDSLDI 276
+E+ VF D+++ LG D+E + SLD+
Sbjct: 6 IESDAGVFTDLIENLGVKDVEVDELYSLDV 35
>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
Length = 484
Score = 25.0 bits (52), Expect = 6.3
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = -2
Query: 249 IKKVAKDIIFNPSPQFSDISLRAKDEAGDILTEHYLS-EKGHLSAPLNKVTNAEIAEEMA 73
+KK A D I + S S + +R AG + + L L LNKVT + A +
Sbjct: 18 LKKTA-DFIESKSSSSSSLEVRL---AGGWVRDKLLGLSSDDLDVTLNKVTGVDFANSIF 73
Query: 72 YCYARMKSDILECFKRQVGKV 10
+ SD + +K +GK+
Sbjct: 74 EYVHSLDSDSVIPYKDALGKL 94
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 24.6 bits (51), Expect = 8.4
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = +2
Query: 392 HMHNIVFGGWQDYAS--CADVEKTS 460
H+H++ F WQ S C +EK S
Sbjct: 141 HLHHLRFSDWQSLVSYCCQAIEKLS 165
>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 574
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = -1
Query: 439 AAGVVLPPTKDDVMHMHFIGRQR*R*KPSYLY 344
A G P K DV+ H + R +PSY Y
Sbjct: 259 AQGCEFEPEKLDVLKRHIVNRMLATPRPSYPY 290
>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 329
Score = 24.6 bits (51), Expect = 8.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 326 VLGATDIEGELFDSLDIVIKPKFKGI*KRLPRILFLTRHLNF 201
VL TD++ LFD+ D+ I P + + L + + T +F
Sbjct: 256 VLWDTDVDVVLFDASDVTITPYVQQLASLLKNMHYYTDTASF 297
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 24.6 bits (51), Expect = 8.4
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -2
Query: 246 KKVAKDIIFNPSPQFSDISLRAKDEAGDILTEHYLSEKGHLSAPLNKVTNAEIAE 82
K + D N +PQ + S R D+A D+L+ + S K + + A + E
Sbjct: 85 KNSSLDAFLNETPQTASYSARNIDDALDLLSLNNSSSKDKIDRHPERRFKAALTE 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,018,747
Number of Sequences: 5004
Number of extensions: 41108
Number of successful extensions: 94
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -