Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0868.Seq
         (499 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0494 + 3735123-3735204,3736020-3736202,3736339-3736523           29   2.7  
08_01_0513 + 4475696-4477606,4478479-4478496,4478832-4478999           28   4.8  
03_02_0519 + 9066918-9068261                                           27   6.3  
11_06_0337 - 22454281-22456399,22458520-22459388                       27   8.4  

>03_01_0494 + 3735123-3735204,3736020-3736202,3736339-3736523
          Length = 149

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 18/34 (52%), Positives = 19/34 (55%)
 Frame = -2

Query: 120 APLNKVTNAEIAEEMAYCYARMKSDILECFKRQV 19
           APL K     IA  +A C AR KSDI   FK QV
Sbjct: 7   APLPKTA---IASLLACCIARRKSDIKMLFKAQV 37


>08_01_0513 + 4475696-4477606,4478479-4478496,4478832-4478999
          Length = 698

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 411 KTMLCICISSADNGEGRSQATCIWRYI 331
           +T+   C S+ D+ EGR +A  +W YI
Sbjct: 371 RTLKVRCSSTTDDLEGRKRAEDLWNYI 397


>03_02_0519 + 9066918-9068261
          Length = 447

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 405 MLCICISSADNGEGRSQA 352
           +LC+C+  A  GEGRS A
Sbjct: 7   LLCLCVFLASGGEGRSPA 24


>11_06_0337 - 22454281-22456399,22458520-22459388
          Length = 995

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 13/54 (24%), Positives = 23/54 (42%)
 Frame = -2

Query: 195 ISLRAKDEAGDILTEHYLSEKGHLSAPLNKVTNAEIAEEMAYCYARMKSDILEC 34
           I+   K + G  L +  +  +  LSA L      E+   + +CY  +  D+  C
Sbjct: 393 IASELKSKIGKTLDQKLIEVEKALSAELGNNLTTEVVRIINHCYKNLPPDLKTC 446


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,066,656
Number of Sequences: 37544
Number of extensions: 259556
Number of successful extensions: 555
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)