BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0868.Seq (499 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_01_0494 + 3735123-3735204,3736020-3736202,3736339-3736523 29 2.7 08_01_0513 + 4475696-4477606,4478479-4478496,4478832-4478999 28 4.8 03_02_0519 + 9066918-9068261 27 6.3 11_06_0337 - 22454281-22456399,22458520-22459388 27 8.4 >03_01_0494 + 3735123-3735204,3736020-3736202,3736339-3736523 Length = 149 Score = 28.7 bits (61), Expect = 2.7 Identities = 18/34 (52%), Positives = 19/34 (55%) Frame = -2 Query: 120 APLNKVTNAEIAEEMAYCYARMKSDILECFKRQV 19 APL K IA +A C AR KSDI FK QV Sbjct: 7 APLPKTA---IASLLACCIARRKSDIKMLFKAQV 37 >08_01_0513 + 4475696-4477606,4478479-4478496,4478832-4478999 Length = 698 Score = 27.9 bits (59), Expect = 4.8 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = -2 Query: 411 KTMLCICISSADNGEGRSQATCIWRYI 331 +T+ C S+ D+ EGR +A +W YI Sbjct: 371 RTLKVRCSSTTDDLEGRKRAEDLWNYI 397 >03_02_0519 + 9066918-9068261 Length = 447 Score = 27.5 bits (58), Expect = 6.3 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = -2 Query: 405 MLCICISSADNGEGRSQA 352 +LC+C+ A GEGRS A Sbjct: 7 LLCLCVFLASGGEGRSPA 24 >11_06_0337 - 22454281-22456399,22458520-22459388 Length = 995 Score = 27.1 bits (57), Expect = 8.4 Identities = 13/54 (24%), Positives = 23/54 (42%) Frame = -2 Query: 195 ISLRAKDEAGDILTEHYLSEKGHLSAPLNKVTNAEIAEEMAYCYARMKSDILEC 34 I+ K + G L + + + LSA L E+ + +CY + D+ C Sbjct: 393 IASELKSKIGKTLDQKLIEVEKALSAELGNNLTTEVVRIINHCYKNLPPDLKTC 446 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,066,656 Number of Sequences: 37544 Number of extensions: 259556 Number of successful extensions: 555 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 546 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 555 length of database: 14,793,348 effective HSP length: 77 effective length of database: 11,902,460 effective search space used: 1047416480 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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