Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0868.Seq
         (499 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF221130-1|AAF32366.1| 1556|Homo sapiens chromatin remodeling fa...    31   2.9  
AF213467-1|AAF70601.1| 1556|Homo sapiens ATP-dependent chromatin...    31   2.9  
AB209255-1|BAD92492.1| 1188|Homo sapiens bromodomain adjacent to...    31   2.9  
AB032252-1|BAA89209.1| 1674|Homo sapiens bromodomain adjacent to...    31   2.9  

>AF221130-1|AAF32366.1| 1556|Homo sapiens chromatin remodeling
           factor WCRF180 protein.
          Length = 1556

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = -3

Query: 380 PTTVKVEAKLPVFGDILKVLGATDIEGELFDSLD 279
           PT VK      +FGD L VL   +  GELFD  D
Sbjct: 413 PTPVKTRLPPEIFGDALMVLEFLNAFGELFDLQD 446


>AF213467-1|AAF70601.1| 1556|Homo sapiens ATP-dependent chromatin
           remodelling protein protein.
          Length = 1556

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = -3

Query: 380 PTTVKVEAKLPVFGDILKVLGATDIEGELFDSLD 279
           PT VK      +FGD L VL   +  GELFD  D
Sbjct: 413 PTPVKTRLPPEIFGDALMVLEFLNAFGELFDLQD 446


>AB209255-1|BAD92492.1| 1188|Homo sapiens bromodomain adjacent to
           zinc finger domain, 1A isoform b variant protein.
          Length = 1188

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = -3

Query: 380 PTTVKVEAKLPVFGDILKVLGATDIEGELFDSLD 279
           PT VK      +FGD L VL   +  GELFD  D
Sbjct: 51  PTPVKTRLPPEIFGDALMVLEFLNAFGELFDLQD 84


>AB032252-1|BAA89209.1| 1674|Homo sapiens bromodomain adjacent to
           zinc finger domain 1A protein.
          Length = 1674

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 16/34 (47%), Positives = 18/34 (52%)
 Frame = -3

Query: 380 PTTVKVEAKLPVFGDILKVLGATDIEGELFDSLD 279
           PT VK      +FGD L VL   +  GELFD  D
Sbjct: 563 PTPVKTRLPPEIFGDALMVLEFLNAFGELFDLQD 596


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,605,461
Number of Sequences: 237096
Number of extensions: 1405950
Number of successful extensions: 2399
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2399
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4536472160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)