Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0868.Seq
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83116-1|CAB05559.2|  480|Caenorhabditis elegans Hypothetical pr...    30   0.81 
AF040645-4|AAB94974.1|  306|Caenorhabditis elegans Hypothetical ...    27   5.7  
AL132876-5|CAC48119.1|  576|Caenorhabditis elegans Hypothetical ...    27   7.6  

>Z83116-1|CAB05559.2|  480|Caenorhabditis elegans Hypothetical
           protein M01B2.1 protein.
          Length = 480

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -2

Query: 150 HYLSEKGHLSAPLNKVTNAEIAEEMAYCY---ARMKSDILEC 34
           HYL +   LSAP  +  NAEI E M YC+   A ++    EC
Sbjct: 408 HYLKKGYRLSAP--RYCNAEIYEFMLYCWNIDATLRPKFTEC 447


>AF040645-4|AAB94974.1|  306|Caenorhabditis elegans Hypothetical
           protein F52C6.8 protein.
          Length = 306

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 207 QFSDISLRAKDEAGDILTEHYLSEKGHLSA-PLNKVTNAEIAE 82
           QFSD+ L  +DE   +L +   S   + +A  L K   AEI+E
Sbjct: 148 QFSDVILAVEDETFHVLKKFLASHSTYFNALLLGKFKEAEISE 190


>AL132876-5|CAC48119.1|  576|Caenorhabditis elegans Hypothetical
           protein Y105E8A.5 protein.
          Length = 576

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 249 IKKVAKDIIFNPSPQFSDISLRAKDEAGDILTEHY 145
           +K++  D+ F+     S   LRA  E   +L EHY
Sbjct: 143 LKRLEDDVAFSKLTPISQTYLRADKETQVVLVEHY 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,997,548
Number of Sequences: 27780
Number of extensions: 222862
Number of successful extensions: 512
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)