Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0868.Seq
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.44 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   3.1  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   3.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   4.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.44
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 387 KCICITSSLVGGKTTPAALTLRRPQLRGIELDAESL 494
           K +CI ++ VGG++    LT+  P    IE   +++
Sbjct: 284 KYLCIVNNSVGGESVETVLTVTAPLGAEIEPSTQTI 319


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -1

Query: 442 SAAGVVLPPTKDDVMHMHFIGRQR*R*KPSYLY 344
           ++ G V PPTK   +   FI  Q      +Y Y
Sbjct: 112 ASPGYVQPPTKHQKLDQKFIFPQENNYNDNYFY 144



 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 310 ILKGSFLTHWI*SLSQNLKGYKKG 239
           I KGSF+T ++  +  N +  K+G
Sbjct: 516 IKKGSFVTQYVGEVITNEEAEKRG 539


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 417 GGKTTPAALTLRRP 458
           GG TTPA+ TL  P
Sbjct: 21  GGSTTPASPTLSTP 34


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -2

Query: 144 LSEKGHLSAPLNKVTNAEIAEEMAYCYARMKSDILE 37
           L++    S PL  V N E    + Y Y    SD+ E
Sbjct: 299 LAKMEKTSKPLPMVDNPESTGNLVYIYNNPFSDVEE 334


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,244
Number of Sequences: 438
Number of extensions: 3073
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)