Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0868.Seq
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61080.1 68414.m06877 proline-rich family protein                   28   4.0  
At3g09530.1 68416.m01132 exocyst subunit EXO70 family protein co...    27   5.3  
At4g30710.2 68417.m04353 expressed protein contains Pfam domain,...    27   7.0  
At4g30710.1 68417.m04352 expressed protein contains Pfam domain,...    27   7.0  

>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -2

Query: 264 KI*RDIKKVAKDIIFNPSPQFSDISLRAKDEAGDILTEHYLSEKGHLSAPLNKVTNAEIA 85
           K+ +  K+  K    +P P  S I +R+      IL+  YL+    +S+P+  + N  + 
Sbjct: 21  KVSKSSKQDVKTSSSSPKPSSSPIPIRSSKS---ILSGSYLTSSRRVSSPIGNLKNISVK 77

Query: 84  E 82
           E
Sbjct: 78  E 78


>At3g09530.1 68416.m01132 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit;
          Length = 637

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 172 GRRYFNRTLSIRKRPSLSASEQGHQC*D 89
           G  +F++  S RKRPSLS   + H+  D
Sbjct: 6   GFSFFSKMTSSRKRPSLSLPSKSHESTD 33


>At4g30710.2 68417.m04353 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 405 SSLVGGKTTPAALTLRRPQLRGIELDAESLR 497
           SSLVG  +   A TLR P   G + D ESL+
Sbjct: 519 SSLVGAISDLEANTLRLPATGGTKADTESLK 549


>At4g30710.1 68417.m04352 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 405 SSLVGGKTTPAALTLRRPQLRGIELDAESLR 497
           SSLVG  +   A TLR P   G + D ESL+
Sbjct: 519 SSLVGAISDLEANTLRLPATGGTKADTESLK 549


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,464,135
Number of Sequences: 28952
Number of extensions: 209089
Number of successful extensions: 454
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)