BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0868.Seq (499 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g61080.1 68414.m06877 proline-rich family protein 28 4.0 At3g09530.1 68416.m01132 exocyst subunit EXO70 family protein co... 27 5.3 At4g30710.2 68417.m04353 expressed protein contains Pfam domain,... 27 7.0 At4g30710.1 68417.m04352 expressed protein contains Pfam domain,... 27 7.0 >At1g61080.1 68414.m06877 proline-rich family protein Length = 907 Score = 27.9 bits (59), Expect = 4.0 Identities = 16/61 (26%), Positives = 29/61 (47%) Frame = -2 Query: 264 KI*RDIKKVAKDIIFNPSPQFSDISLRAKDEAGDILTEHYLSEKGHLSAPLNKVTNAEIA 85 K+ + K+ K +P P S I +R+ IL+ YL+ +S+P+ + N + Sbjct: 21 KVSKSSKQDVKTSSSSPKPSSSPIPIRSSKS---ILSGSYLTSSRRVSSPIGNLKNISVK 77 Query: 84 E 82 E Sbjct: 78 E 78 >At3g09530.1 68416.m01132 exocyst subunit EXO70 family protein contains Pfam domain PF03081: Exo70 exocyst complex subunit; Length = 637 Score = 27.5 bits (58), Expect = 5.3 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = -1 Query: 172 GRRYFNRTLSIRKRPSLSASEQGHQC*D 89 G +F++ S RKRPSLS + H+ D Sbjct: 6 GFSFFSKMTSSRKRPSLSLPSKSHESTD 33 >At4g30710.2 68417.m04353 expressed protein contains Pfam domain, PF04484: Family of unknown function (DUF566) Length = 644 Score = 27.1 bits (57), Expect = 7.0 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = +3 Query: 405 SSLVGGKTTPAALTLRRPQLRGIELDAESLR 497 SSLVG + A TLR P G + D ESL+ Sbjct: 519 SSLVGAISDLEANTLRLPATGGTKADTESLK 549 >At4g30710.1 68417.m04352 expressed protein contains Pfam domain, PF04484: Family of unknown function (DUF566) Length = 644 Score = 27.1 bits (57), Expect = 7.0 Identities = 15/31 (48%), Positives = 18/31 (58%) Frame = +3 Query: 405 SSLVGGKTTPAALTLRRPQLRGIELDAESLR 497 SSLVG + A TLR P G + D ESL+ Sbjct: 519 SSLVGAISDLEANTLRLPATGGTKADTESLK 549 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,464,135 Number of Sequences: 28952 Number of extensions: 209089 Number of successful extensions: 454 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 445 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 454 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 878448512 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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