Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0867.Seq
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       21   8.1  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    21   8.1  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   8.1  

>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 334 RHKGARTETAFKLSQQSH 387
           RHK  + E   K+ QQ+H
Sbjct: 84  RHKQQQQEKQQKIEQQTH 101


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 334 RHKGARTETAFKLSQQSH 387
           RHK  + E   K+ QQ+H
Sbjct: 235 RHKQQQQEKQQKIEQQTH 252


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 334 RHKGARTETAFKLSQQSH 387
           RHK  + E   K+ QQ+H
Sbjct: 294 RHKQQQQEKQQKIEQQTH 311


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,421
Number of Sequences: 336
Number of extensions: 1680
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)